KEGG   Oncorhynchus kisutch (coho salmon): 109878453
Entry
109878453         CDS       T09179                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109878453
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oki03021]
    109878453
   03036 Chromosome and associated proteins [BR:oki03036]
    109878453
Transcription machinery [BR:oki03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109878453
   Coactivators
    SAGA/TFTC/STAGA complex
     109878453
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     109878453
    STAGA complex
     109878453
    TFTC complex
     109878453
    SAGA complex
     109878453
    SLIK complex
     109878453
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_VPS8 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_SCAP ANAPC4_WD40 DSE1_N Beta-prop_Aladin PAC11 Beta-prop_TEP1_C Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR41 CFAP251_N Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_DCAF12 ASA1 Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_Nup120_160 Tricorn_2nd WD_LRWD1 LisH_PAC1 LisH_TPL PROPPIN Beta-prop_ACSF4 RAB3GAP2_N VID27 Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 109878453
NCBI-ProteinID: XP_020326266
Ensembl: ENSOKIG00005034921
LinkDB
Position
LG1:70930729..70938505
AA seq 749 aa
MAAVQDGQLNMEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPVSDSAGAGSGGVPNVSADGGDANSLLSRV
SIATPVAPPATAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEH
MKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLSPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTLFHPNSNYVATGSADRT
IRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGH
SDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLL
GTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatggtcagctcaatatggaggtcgaaaaagacataaaaactgaa
ataacaaacgatgggtctggaaacatcaatgcaaactcttcgtcacccggttctacgtct
tcaggcggtaaatcgaaatctccagcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgaccgagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgcagatgattcccctgtatccgattcggcgggagctggatcg
ggtggcgtcccaaatgtcagtgctgatgggggggatgccaactctctcctcagccgagtg
tcaatcgccacccccgtcgcacccccggccaccgcacccccaaaagtggtggcagcatca
ggtggggaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggac
cctgtcctctacccactctactataacggcctgaagaagtttatagagtctgtcctggac
tgccacagagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggag
ctggtctacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgac
caggagtgttactacgaggaggacctccgcatcctctccagtatgtccaagaaggaacac
atgaagggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcc
cgagactcctaccagctgttgaagaggcacctgcaggaacgtcagaacaaccagatctgg
aatattatacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagt
cagattgatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagcc
aaggtgttctatggtcttctgaaggagccagagatcgaggtacctctggacgatgaggat
gaggaggcagagaacgaggagggcaaacccaagaagaagaaaccgaagaaggacagcatg
ggctccaagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctccct
gagctgaaggactctgacaagctggacaagatcatgaacatgaaggaggccacgaagaag
attcgtctgagcccagacaacctaccctccatctgtttctactccttcctcaacgcctac
cagggtctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgct
gactccaccgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgca
gcagacctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgag
aagacagccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagc
ttcagccctgacaggaactacctgttgtccagttctgaggacggtacagtcagactgtgg
agtctgcagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggac
actcagttctcaccttatggttactactttatctctgggggacatgaccgagtcgctcgt
ctgtgggcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatc
acgtgcaccctcttccaccctaactccaactacgtggccacgggttcagctgaccgtaca
atccgcctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggt
cccattcattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgac
ggcagggttctactgtgggatgttggtcacggcctgatggtcggagagctgaagggacat
tctgacaccatctacgccctcaagttcagcagggacggagagatactagcctcaggctca
atggataacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggat
gacttcaccgcggcaacaggtcacatccatctaccagagaactcccaggagctgttgcta
ggcacctacatgaccaagtccaccccagtcattcacctgcacttcacccgcaggaaccta
ctgctggctgcaggggcctacaacccatga

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