Oncorhynchus kisutch (coho salmon): 109878755
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Entry
109878755 CDS
T09179
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109878755
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109878755
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Ac45-VOA1_TM
Motif
Other DBs
NCBI-GeneID:
109878755
NCBI-ProteinID:
XP_031645761
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Position
LG15:complement(24996458..25242929)
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AA seq
551 aa
AA seq
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MDSTVDNRESKAALRPCVPRSLLMRCLVGFPTVVCFMLSVSSIAVCLLMSLKTYQLENRM
HALEMEKNTAFNPPESAFMREDGTVIPTLRRSIETLLQERLSEVMPKLRMARDIPQECSC
PPGPPGKRGRMGRRGDTGAPGKTGRDGYPGPLGMDGKPGLPGPKGSQGPVGPKGDKGDQG
DIGPRGPPPHNSYAGLHSNQILTVKGDQGSPGPRGPPGNTGKDGPRGPAGEQGFPGRDGM
EGQAGSPGKPGEDGEAGYAGPQGPPGSKGPAGERGMDGLPGFKGDKGDIGEQGAQGDMGY
PGEKGVPGSTEVIDFNGKLLEAFQAIQTISVRGPPGLPGSPGGKGELGLPGPSGMDGEKG
PKGDMGETGSIGEKGEKGEMGLSGPGGIDGQKGEMGDSRLEDNLVQMISQPGPPGLPGPP
GLPGPPGYMGHHGMSGPKGEPGDRAKGEKGDIGPAGLRGMDGPQGPPGPTGLVGLPGTKG
EKGKSGEPGMDGFPGLIGEKGSRGDRGDKGDRGTMGKRGLKGGKGEQGPPGLDQPCPVGQ
DGLPIPGCWHK
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggattcaacagtggataaccgggagagcaaggcagcgctccgtccatgcgtgcccagg
tcccttctcatgcgctgtctggtggggttccctacggtggtgtgtttcatgttgtccgtg
agctccatagccgtgtgcctgctcatgagcttaaagacttaccaactggagaaccgaatg
catgcgctagagatggagaaaaacacagcgttcaacccgccggagagcgccttcatgcgc
gaggatgggactgtaataccgacgctgaggagatctatcgagacgctactgcaagagaga
ctgagtgaagtgatgcccaagctgcgcatggcgagagacatcccacaagagtgttcctgc
ccaccaggtcctcctggaaagcgtggaaggatgggcagaagaggtgacaccggagctcca
ggcaagactgggagagatggatacccgggcccgcttggcatggatggcaaaccaggtctc
cccggtcctaaaggaagtcagggaccagtgggacccaagggagataagggtgaccaagga
gatattggtcccaggggccctcctccccacaactcatacgctggtctgcacagtaatcag
atcctcaccgtcaagggtgaccaagggtctcctggccccagaggccctcctggaaatacg
ggaaaagacgggccccgtggcccggctggagaacagggtttccctggtcgcgatggtatg
gagggccaagcaggttcacctggaaagccaggtgaagatggtgaagcaggatacgctgga
ccacagggacccccagggtcaaagggcccggctggtgagaggggcatggacggactccct
gggtttaagggagacaaaggagatatcggagagcaaggagcccagggagacatgggttac
cctggtgagaaaggggttccaggctctactgaggtcattgacttcaatgggaagctgcta
gaagccttccaggccatccagaccatcagtgtcaggggcccaccaggattaccggggtcc
ccaggtggaaagggagagctaggcttgccgggaccatctggaatggatggggagaagggt
ccgaagggagatatgggggagacagggtcaatcggagagaaaggagagaaaggagagatg
ggtctctctgggccagggggaatagatggacagaagggagagatgggagactccaggctg
gaagataacctggttcagatgatttctcagccgggccccccaggactcccaggcccgcca
ggactccccggacctccagggtacatgggtcaccatggaatgtctggccctaagggagag
cctggagacagagctaaaggggaaaagggagacattggacctgctggactgaggggtatg
gacggtcctcagggtccccctggtcccacaggattggtgggtctcccaggcacaaaagga
gagaagggcaagtccggggagcctggaatggatggtttcccaggcctgattggtgagaag
ggatcccggggagacagaggagacaagggtgaccgggggacgatggggaagagaggtctg
aagggcgggaagggggagcagggtcctcctggactggaccagccctgtcctgtggggcaa
gatggactgcccataccaggatgttggcacaagtga
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