Oncorhynchus kisutch (coho salmon): 109878889
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Entry
109878889 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109878889
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109878889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
109878889
NCBI-ProteinID:
XP_031642218
Ensembl:
ENSOKIG00005025573
LinkDB
All DBs
Position
LG2:6862809..6926329
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AA seq
2179 aa
AA seq
DB search
MGVQTEPEAADSPLGTASPRGGEKEREREERERREEMEVEREVCQLSIGMALGGPMGGGV
RLVHSFSPDGVVGGHHYGNVPPHPSSLVTTSVVTITGEGYPDREIEQEREQERQKQPQTP
EDDMEMSRFSMGTQHRLILSKPLLGGHSYPSSQHLVQGLGTPLGSHLSSLTLPGPEALGM
TPPPHLPPSKSALVPLDKTPSQIPTPTPGGGSTSSSASSSRSRTPLSAALQKYKKGDVVC
TPNGIRKKFNGKQWRRLCSREGCMKESQRRGYCSRHLSMRTKEMEGAGGGGERDRGRGGG
GSSSGTVTPSDLRGFDWDETSRDSSEASSRGDSRPRLVLPSLLPHDFSRFDFDECEAATM
LVSLGSSHSGTPSFSPISNQSPFSPAPSPSPSPLFGFRPANFSPITASSVLPPPRRHRHP
SATGGKLGTPGGAERERHTSGVQPSFHTNMTFTVPMSPSKRKTDVPPPPSSHPHHDYPPK
PELEQGDLNPASFPVLSPQTPAHTHAYTPTFSCPRGVSTPTSRPPSSSATSPPPLLVSPT
PPSPPDSGSCRFHPTSQQALRDSPVIVRNPEVPLAKFTERPLGRGGGGVGDPKSLNSVTP
QPVSTLQVPVPINAAAATATNDTVLLQSPTPTLVLVSSAPPSLTSITPGYPTLACISIST
TPPSSGPPLTNPASPGEGRGRTERTGSFGGEVQQPVACHPSPTALLPLILPAENLHPTPC
KDIIMGRPGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDASTQSGEGQQPINHPQAASLKT
ESQGGAVLLQEANEGPPSLERGPTTRLTPSTDDLAPEREAERERPDSETESDVDDPFFPS
VLPEPLSVTPVKRRTQSLSALPKDGDKSSPGKREKDHIRRPMNAFMIFSKRHRALVHQRH
PNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSDGR
GLPGPGGKDIRERSMSETTEPHGVELKGVGPGLLGVSERNPGEAHVGQLPRPRAFSQSAV
HSLERCERGNTQALAELSQMCGDGGGQFSGRAQTLSRSQRGVSEDMTSDEERMVICEEEG
DDDVIEDPYPASSIDLKCKERVTDSDSDNASGNESDRKRVFAPVICSSSSQPTPHGRSVS
LSSYPSKRYDEERGGGLSDRRRKRGIEGGGGDGGGVASLSLSLSSSGHSVISSPGGPVPS
ALAPLGLSPLLGLGPVRVASTVVTNVVRPVVSTPVPIASKPRDGAASSIPHPPDRRSLPS
QQAQLLIGSGVGSGGPGYYSSSSPNPIGAGAGPGGLVTSLVFPGHSQSTVQLISPSPHPS
SHHQLPPTAPVSAPTHNQTNGPLPLSLLQPQFLSSSSLASPGGKAITQVQYILPTLSASS
NPKSPSPQLHNLPNSIFNLPTAPPTHMSIANGKQVGPGSLMGYASSPAVGVVSPGARVQS
QSPVLQGKMLLPMATVRTAPAPAQQYPLVAPPLPVQNGAQAGSKIFQIAPMPVVQSQLQQ
GGAGHPGSPFPVTLGTATVLHQGSAPSQTVLLPPPPTRITYVQSTPGVPSPLPLVSTTTG
SSSPQQAQPTPGSAYVPSPLATLGFTAIAPPGQNLVQPLITGQPPLQAPVQSPTCPSLPS
GPASASVGQIITAIYPPTCITMATGVVSMSAVPPNMVYTVSSSSSLSTHILPKHTFAPAT
PTTHTHMQLQSDRQTDRQAGERPTDRMSHSQSEKAADRPAETQPELQAYGQTDRPTLTQA
DRQTARQAQTFNKCSSLVAPPSGSSLLLRPCSPPLPSHTSTGSAPGTPKLTQLPVRTPQK
IKATVANIPVGNYEGGGRGKEREKNRERERESTGANSRFSFELEHPGKSASPSQHTHAAE
EPPSDRPPEGHGPGDNTDTRSTEASNESGWKDSVPSSPLPPPLGTDPALPPPQSDKDAPP
PKKVKARPPPLKRTFDSVDKVLSEVYFEERFAQLPEFRPEEVLPSPTLQSLATSPRAILG
SYRRKRKNSTDLDSSTEDPVSPKRKSRRRSSCSSEPSTPKSAAKCEGDVFTFDRPAPPSV
CPPPGTGAEGEDILGELEFDKVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATAAFQAR
YSDIFPTKVCLQLKIREVRQKIMQTAVPSETNEASSLPGPSCAQSGEGTGGGAEPLGEEV
DREREGSPEELRDSQESSR
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccagacagagcctgaggctgctgactcccccctgggaactgcctcacccagg
gggggcgagaaggagagagagagggaggagagggagaggagggaggagatggaggtggag
agggaggtgtgccagctgagtattgggatggcgctgggtgggccgatgggagggggggtg
aggttggtgcatagcttctctccagatggggtggtgggggggcatcactatggaaacgtc
ccgccccatccctcctcgttggtaacgaccagtgttgtcaccatcactggagagggttac
cctgacagagagatagaacaagagagggaacaagagagacagaaacagccccaaacacca
gaggatgacatggagatgtctaggttcagtatgggcacccagcatcgcctcatcctctcc
aagcccctcctcggggggcacagctacccctcctcccaacacctggtccagggcctgggc
acgccactgggctctcacctgtcctccctcaccttgcctggccccgaggccctgggcatg
acccccccaccacacctacccccttccaagagcgccctggtccccctggacaagaccccc
tcccagatcccaacccctacccctggaggggggtctacctcctcctcagcctcctcctca
cgctcccgcacccccctgtcggccgccctgcagaagtacaagaagggggacgtggtgtgc
acccctaacggtatccgcaagaagttcaacggcaagcagtggagacgcctctgttccaga
gagggctgtatgaaggagtcccagagacgaggctactgctcacgccacctctccatgaga
actaaagagatggagggagcgggaggagggggagagagggacaggggcagaggaggaggg
gggagcagttcagggacggtcaccccctcagacctgcgtgggtttgactgggatgagacg
tccagagacagcagcgaggccagcagtagaggagactcccgccctcggctggtgctgccc
tccctcctaccccatgacttctccaggtttgactttgacgagtgtgaggcagcaaccatg
ctggtatctctgggcagctctcactctgggaccccctccttctccccaatctccaaccag
tcccctttctcccctgccccttctccctcaccctcccccctcttcggattccgtcccgcc
aacttctcccccatcaccgcctcctccgtcctcccccctcctcgcagacacagacacccc
agtgccacagggggaaagctgggcacccctgggggggcagagagggagaggcatacctca
ggggtccagccgtccttccacactaacatgaccttcactgtccccatgagccctagcaaa
cgcaaaacagacgttccccctcctccctcatcccacccccaccacgactacccccccaaa
cctgagctggagcagggggacctgaaccctgcctcgttccccgtcctttccccccagacc
ccagcacacacccacgcttatacacccaccttctcctgtccccgaggggtgagcacacca
accagccggcccccctcctcctccgccacttcccctcctcccctcctggtgtccccaact
cccccctcccctccagactcaggctcctgccgtttccaccccacatcccagcaggccttg
cgggactctccagtgatcgtgcggaacccggaggttcctctggccaagttcacagagcgt
ccgttaggccgtgggggggggggagtaggtgatcctaagagtcttaacagcgttactccc
cagcctgtctccactctccaagtccctgtacccatcaacgctgctgctgccacggcaacc
aacgacaccgtcctcctccagagccccacccccaccctagtgctggtgtcatccgccccg
ccctccctgacctccatcacccccggttaccccactttggcttgcatctccatctccacc
acgcccccctcttcgggaccccccctcaccaacccagccagcccaggggaagggcggggt
aggacggagaggacaggctcgtttgggggggaggttcagcagccagtggcctgtcacccc
tctcctacagccctgctgcccctcatactgcctgcagagaacctgcaccccacaccatgc
aaagatatcatcatgggacgccccgggacagtctggaccaacgtggaaccccggtcagtt
cctgtgtttccctggcattcattggtccctttcctggcaccaacccaatcagatgcctct
actcagtctggtgagggccaacaaccaatcaatcacccccaagctgccagtctgaaaaca
gagtctcaggggggtgcagtgctgctacaggaggccaacgagggccccccctccctagag
agaggacccacaacacggctgactccctccacggacgacctggccccggagagggaggcc
gaaagagagaggccagacagtgagactgagagtgatgtggatgacccgttcttccccagt
gttcttcctgagcccttgtctgtgactcctgtgaagagacgcactcagtccctcagcgcc
ctgcctaaagatggggacaagagcagccctggcaagagggagaaggaccacatcaggcgg
ccgatgaacgcgttcatgatcttcagtaaacgtcatcgagcgctggtgcaccagaggcac
cccaaccaggacaaccgcacggttagcaagatcctgggcgagtggtggtatgccctgggg
cccaaagagaagcagaagtatcacgacctcgccttccaggtgaaggaggcccactttaag
gcccacccagactggaagtggtgcaacaaagacaggaagaagtctagttctgatggccga
gggctcccagggccggggggcaaagacattagagaaaggagcatgtctgagaccaccgag
ccccatggtgtggagctgaaaggggtggggcctggcctgctgggtgtgtctgagcggaat
ccaggggaggcccatgtaggtcagctaccccgcccccgagccttctcccagagtgccgtg
cacagcctggagaggtgtgagaggggcaacacacaggccctggccgaactgtcacagatg
tgtggggatggtggtggccagttttcggggcgcgcccagaccctgtcccggtctcagagg
ggggtcagtgaggacatgaccagtgacgaggaacgcatggtcatctgtgaagaggaggga
gacgacgatgtcatcgaggacccgtaccctgccagctccatagacctgaagtgtaaggag
agagtgacggacagcgacagtgacaacgcctctgggaacgagagcgatcgcaagcgtgtc
tttgctccagtgatctgctcttcctcctcccagcccaccccccacggacgctccgtctct
ctctcctcctacccttccaaacgctacgacgaggagagaggaggggggctctcagaccgc
aggaggaagagaggaatagagggaggaggtggtgatggaggtggagtggcatccctctct
ctttccctgtcctcctcaggccactctgtcatctccagccccggaggcccagttccttct
gcccttgccccccttggcctgtctcctctcctcgggttggggcctgtcagagtggcctct
acagtggtgaccaacgtggttcgtccggtcgtgagcacgccagtccccatcgctagtaaa
ccccgagacggagcagcttcatccattcctcacccaccagacaggaggtccctcccatcg
cagcaagcgcagcttttgattggatccggagtaggaagcggagggcctgggtactactcc
tcatcctcacccaatcccataggtgcaggggcgggtccaggggggctggtgaccagcttg
gtgttcccggggcacagccagtccaccgtccagctcatcagtccctccccccatccgtcc
tcccaccaccagctgccccccaccgccccagtctctgcccccacacacaaccaaaccaac
ggccccctgcccctctccctgctccagccccagttcctctcctcgtcatctctggcatcc
cccgggggcaaagccatcacacaggtccaatacatcctgcccaccctatcagccagctcc
aatcccaagagcccctcccctcaactgcacaacctgccaaacagtatcttcaacctgccc
acagctccgcccacccacatgtccatagccaatgggaagcaggtggggcctggctcgctg
atgggatacgcctccagcccagccgtgggtgtggtcagcccgggagccagagtgcaatcc
cagtccccagtcctacagggcaagatgctgcttcccatggcaacagtgaggacggcaccc
gcccctgctcagcagtaccccctcgtggctccacctcttcctgtccagaatggagctcaa
gcaggaagcaagatcttccagatcgctcccatgcctgttgtccaatcccagctccagcaa
ggcggggcagggcatcctgggagcccttttcccgttaccttgggaacggccacagtgttg
caccaaggttctgccccatctcagactgtgctgctgccgcccccaccaaccaggatcacc
tatgtccagtccacgccaggagtcccctctcctctgcctctggtctccacaacaaccggc
tcctcctccccccagcaggcccagcccacccctggatctgcatatgttccgtcgccccta
gcaacgctgggctttacagccatagctccccctggacagaacctagtccaacccctcatc
acaggtcagcctccccttcaggccccagtccagtcccctacctgcccctccctcccctct
ggcccagcctctgcttcagtgggacagataatcaccgccatctaccctcctacctgcatc
accatggcaaccggggtggtctccatgtcagccgtgccgcccaacatggtgtacacagtc
tccagctcctccagtctgtccactcacatcctgcccaaacacacattcgcccctgccacc
cccaccacacacactcacatgcagctccagtcggacagacaaacagacaggcaagcaggg
gagagacccacggacagaatgtctcactctcagtcagagaaagcggcagacagaccagcg
gagacgcagcctgagctacaggcgtacggacagacggacaggccaaccctcacacaggcg
gacagacagacggcgaggcaagcccagaccttcaataagtgcagcagcttagtggcgccc
ccaagtggctcctcattgttactgcggccctgcagcccccctctgccctctcacacttcc
acaggcagcgcaccaggcacccccaaactcacccagctcccggtgagaacccctcagaaa
atcaaagccactgttgccaacatcccggtgggcaactacgagggaggaggtcggggaaag
gagagggagaagaaccgagagagggaaagagagagcactggagcaaacagtcgtttttcc
tttgagctggagcatcctgggaagtcggcgtccccctcccaacacacacacgctgctgag
gagcccccctctgacagaccccctgagggacacggccctggggacaacactgacacacgc
agcacagaggccagcaacgagtcagggtggaaggactccgtcccctcctcacccctgccc
cctcccttgggtacagaccctgccctgccacctccccagagcgacaaagacgcccctcct
cccaagaaggtgaaggcccgccccccgccactcaaaaggacctttgactctgtggacaag
gtgttgtcggaggtgtattttgaggagcgttttgctcagctacccgagttcaggccagag
gaggtgctgccctcccccaccctgcagagcctggccacctccccccgcgccattctgggc
agctaccgccgcaagaggaagaactccacagacctggactcgtcaacagaggaccccgtg
tctcctaagaggaagagtagacggcgctccagctgcagctcggagcccagcacacccaag
agcgccgccaagtgtgagggagacgtcttcaccttcgaccgaccagcccccccgtctgtg
tgtccccctccagggacaggagctgaaggagaggacatcctgggggagctggagtttgac
aaggtgccctactcctctctgagacgcaccctggaccagagacgagccctcgtcatgcag
ctcttccaggagcatggcttcttcccctcagcccaggccacggcagccttccaggcacgc
tactcagacatcttccccaccaaggtgtgtctgcagctgaaaatcagggaggtccgacag
aagatcatgcagactgccgtcccctctgagaccaacgaggcttcctcgctccccggaccg
tcttgcgcccaatcaggggaagggacaggaggaggggcggagccattgggagaggaggtg
gatcgagagagggagggtagtccagaggagctgagggattcgcaggagtcttctagatga
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