Oncorhynchus kisutch (coho salmon): 109878980
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Entry
109878980 CDS
T09179
Name
(RefSeq) periodic tryptophan protein 1 homolog isoform X1
KO
K14791
periodic tryptophan protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oki03009
]
109878980
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
90S particles
Other 90S particles
109878980
Pre-60S particles
Other pre-60S particles
109878980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
EIF3I
WDR55
Beta-prop_EML_2
WD40_RFWD3
Beta-prop_EIPR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR41
WD_LRWD1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
109878980
NCBI-ProteinID:
XP_020326764
Ensembl:
ENSOKIG00005008767
LinkDB
All DBs
Position
LG19:2635960..2641775
Genome browser
AA seq
503 aa
AA seq
DB search
MCHFYVTSGSLRTVLDTLELYITLNFVCITRKLVELSKEELQRIIAEAKEQLGERVGEEE
DDEGMASGQEQSDEAEAVQGQEPEQDENEAGREEADELAEYGLDRYDEEDSVTANLGDSL
AGLTVFSTNEEDPYITIKDTDQYEREDFQIKPNDNLVISGRAEKDCCNLEIHVYNAEEES
LYVHHDILLPAYPLCVEWLNFDPSPEGTGNYAAVGNMTPQIDVWDLDVVDCLEPAFTLGS
KKASKKKKKSKKAAAEPVEGHTDAVLDLSWNKLVRNVLASGSADKTVILWDLAQGKPATT
LCRHTDKVQTLMFHPFEAQTLISGSYDKSAILYDCRSPDSSHRTWRFSGQVERVAWNHFS
PCNFLASTEDGFVYCLDARSDKPVFTLRAHDGEVSGLDLSSQIRGCLVTSSADKHVKIWD
ILGNKPNLVHTRDMKMGVLFCAACCPDMPFVYAFGGQRDGLRVWDISDVAAVTEVFGNRE
RLVATTAPEASSSTSSTADMELS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtgccatttttatgtaacttctggatctttacgaactgttttggacactttagagttg
tacattacattgaatttcgtgtgcattactaggaaactggtggagttgagcaaagaagaa
ttgcaacgcattatagcagaggcaaaagaacaattgggtgaacgcgtaggtgaagaggag
gatgatgaaggcatggccagcgggcaggaacagagtgacgaggcagaagctgttcaggga
caggagccagagcaagatgaaaatgaagcaggaagggaggaagctgatgaactagcagag
tatggtttggatagatatgacgaggaagactctgtgactgccaaccttggtgacagcctt
gccggcctcacagtgttcagcaccaatgaggaggatccttacattaccatcaaagacaca
gaccagtatgagcgagaggactttcaaatcaagcccaatgataaccttgtaatttcaggc
agagcagagaaggactgctgcaacctggagattcacgtatacaatgctgaggaggaatcc
ctctatgttcaccatgacatactcctgccagcctatccactgtgtgtggagtggcttaac
tttgaccctagtccagaaggcacaggcaattatgcggctgtaggcaacatgacaccgcag
attgacgtgtgggacctggatgtggtggactgcctagagcctgccttcactctggggagc
aagaaggcctccaagaagaaaaagaaaagcaaaaaggctgcagcagagccagtggaaggt
catacagacgctgtactcgacttatcctggaacaaactggtccgcaacgtcttggccagt
gggtcagccgacaaaacagtgatcctgtgggatctggcacagggaaagccggccacaaca
ctgtgcagacacactgacaaggtccagacgttgatgttccacccctttgaagctcagacc
ctgatatcaggatcatacgataagtcggcaatcctgtatgactgccgcagcccggacagc
agccatcgcacttggaggtttagcgggcaggtggaaagggtcgcctggaaccacttctcg
ccctgcaacttcctggcgagcacagaggatggctttgtttactgtctggacgcacgctcg
gacaagccggtgtttacactaagggcacatgacggagaggtgtcaggcttggaccttagc
agccagatccggggatgcttggtcacctcgtcagcagacaaacacgtcaagatttgggac
atcttggggaacaagcccaatctggttcacacccgggacatgaaaatgggggtgctgttc
tgtgcagcgtgctgtcctgacatgccctttgtatatgcatttggaggacagagggatggc
ctgcgggtttgggacataagtgatgtggcagcagtcactgaggtgtttggcaatcgggag
cggttggtggcaaccacagcgcctgaggcatccagcagcacttcctccacagcagatatg
gagctttcctag
DBGET
integrated database retrieval system
