Oncorhynchus kisutch (coho salmon): 109879593
Help
Entry
109879593 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109879593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109879593
03021 Transcription machinery [BR:
oki03021
]
109879593
03036 Chromosome and associated proteins [BR:
oki03036
]
109879593
Transcription factors [BR:
oki03000
]
Eukaryotic type
Helix-turn-helix
ARID
109879593
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109879593
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109879593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
109879593
NCBI-ProteinID:
XP_031649325
Ensembl:
ENSOKIG00005011308
LinkDB
All DBs
Position
LG17:complement(26754682..26843240)
Genome browser
AA seq
2282 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPLEESVPGEKQHENKEPGSDNGSPGQKDLQDGVDA
GNVGGGGEPDMKNGNSSRVTNNNNQNDTGGPEGNNHPGMGHHHQGSFPPPPYGYNQHYSR
GPFHQHGGQQSPGMAAAAGPAVQSGNMMDPYPPNSQDHGFPNHFNNYSPFPNRTSYQGQG
YAMNSPRNNQPPAAGGQPGKQQPAGGTTAMAASYNNQRYNMGNTQPTSTPTLNQLLTSPS
STRSYQNYPQGDYSNQEGAGKGAADMASSQYGGGHPGWQQRSHQPPPMSPGNTGQPLNRN
QPPSPMDHVGKMRGQGYGGANPYSQQQGQGQGPPPPGAQQGASYPGQGYGPPGPQRYPMG
MQGRTPTGMAGMQYGQQMAGFGQQGPGGYGQQSQGYYSQHGPPPHSGQQQAPYPQQVHPS
QGQGSPQGGPPQAQPPYNQGPPQPPQQPGPQQGQSGPSYPQQQGPPGQQPPQQQPPSQQQ
GLPQQQQDRAAPPQAQPPPGHQQPPVHQPPPGHQSSPGPQGQHPSPVHSGPPQQQGQSQQ
GQPSPYSQTPPLQQQGQSQQGQPSPYSQTPPLQQQSPFHGFPPPPQELSQDSFSSQSSAP
PSNQPMTSNKSGTEDSMQGRPSSLPDLSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSN
PAQSPFSPHTSPHLPGIRGPSPSPVGSPASVTPSRSGPLSPAAVPGNQMPPRPPSVHSDG
SLHTSMGQSAMGQSAMGQDRVYMRNPQMPPHGSPQQPGSALSPRQSSGGQMLPGMGPYPQ
NNSMGNYGPQGVQYGPQGYPRQPGYSGMPNANYPGGPGGIPGQAGGAPYAGMPPGRMGPG
QMAARPYGPGMGPNMGPGVPPQVTSGMCPPPGMNRKGPGGPPDAASAMHHGANSILNRPP
GYPPNMPQGMMGAGPPYGPGPGAINSMQGMMNQGGPYGGGPMGGNMANNTPGMAPSPEFG
IDVKLNPAQKMNNKVDGTSKPETKKKSNSSTTTNEKITRLYELGPEPERRTWVDRYLAFA
EEKATGMTNLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWRELSTNLNVGTSSSAASS
LKKQYIQCLYAFECKVERGEDPPPDLFTDAKKTTQPKIQPPSPAGSGSLQGPQTPQSTSS
SMAEGGDLKPPTPASTPHSQMPPMPVRLQDPFADGGDPAFARRNSMTPNSYQPGMGGPEM
MGHMGPYESNKDPFGGMRKAGEQFMTPGPGPNSGMEGQFNRGPPGPNMQMGPRQQYPYGP
GYDRRQEPGMGPDGSMGPGAPQPNLMPSGADSGMYSPSRAPPQQRHDSYGNQYPGQGAPP
GGPYPNQQPGMFPQQQPNYKRPPVDGAYGPPAKRHEGDGMYNVPFSGQQPGPQPSGGPQG
QQDMYNQYNAGYPGSDRRPPGPQGQFPFPFGRDRGPSSGGPNSQSPMPPQMMGGPMQAAP
DGPQGPMWQGRNEMGYPNYPNRQGPPGPGQGPPQGYHSMNRSEEMMPGADQRMNHESQWP
GHPIQRQSPYGPGGSGPPMSRPLQSNYQSSQNHISQVSSPAPMPRPMESRTSPSKSPYMH
SGIKMQKAGPPVPASHIGQAPVQPPLIRRDISFPPGSVEASQPILKPRGRLTMKDIGTPE
AWRVMMSLKSGLLAESTWALDTINILLYDDNSISTFNLCQLPGFLELVVEYFRRCLIQIF
GILKEYEVGDPGQRTLTDPYAADEDWSDEELPEQEDMEEEEDEEEDDERKSNADTTTSSQ
QVQVKKEEEEEKSTPEKSTAEEEEEREGGESSSTSSPPQNLSLLQEKPKQASKFDKLPIK
MVRKKDPFPGGRSSKLGRRQSFDSGLIHWSIGGGDTTEHIQTHFESRSDLLKQRKQVLPS
ATESRKVAVPPTVSENPEETTKPGKEEQTTKTSTPTTPTPVTATIDDVLSARPGSVTEEA
VRGAAEEQKENRGQFLYSLRQAQQSRRNITILEDEPHSKDETALSTLSDWQDALARRCVC
VSNIVRSLSFIPGNDLEMSKHPGLLLLLGRLVLLHHRHPERKQAPVTYEKEEDEDERMSC
ERDEWWWDCLEVLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEALDPF
PMLGPHGALSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYGTLVRLVGERKVAVC
REMSVVLLANLAQGDSMAARAIAVQKASVGNLLGFLEDSLAATQYQQSQSSLMHLQGAHF
EPTSVDMMRRAARALHAMAKVEENHSEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIG
QS
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgctagcgtcgccactctcaacactagcccgccatccgaacttaaa
aagccggatcgggacccactggaggagtcggtaccgggagagaaacaacatgaaaataag
gaacctggatctgacaacggatctccgggccagaaggatctgcaggacggggtcgatgct
ggaaatgtagggggaggaggggagcctgacatgaagaacgggaactcgtccagggtgact
aataataacaaccaaaatgatacggggggaccggaggggaataaccaccccgggatgggc
catcaccaccagggctcattccctccacctccttacgggtacaaccagcactacagccgg
ggcccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcggggccg
gcagtgcagtcaggcaacatgatggacccatacccgcccaactcacaagaccacggcttc
cccaaccattttaacaactacagccccttcccgaaccggacttcttatcagggccaagga
tacgccatgaattccccgcgtaataaccagcccccggcggctggggggcagccaggcaag
caacagccagcaggcggaactacagccatggctgcctcgtacaataatcagaggtataac
atgggaaacacacagcccacgtctaccccgacattaaatcagctcctaacgtctcccagc
tctacgaggagctaccagaattacccacaaggagactatagtaaccaggaaggggctggc
aagggagcagcagatatggccagcagtcagtatggtgggggtcatccgggttggcaacaa
aggagccaccagccgcctcctatgagcccagggaacacgggacaacctctgaacagaaac
cagccccccagccctatggaccatgtagggaagatgcggggccaggggtacggtggagcc
aacccctactcccagcagcaaggccaggggcaaggccctcctcctccaggggcccaacag
ggtgcctcctacccaggccagggctatggacccccggggcctcaaaggtatcctatgggc
atgcagggacgcacccccactggcatggctggcatgcaatatggacaacagatggccggc
tttgggcagcagggtccagggggctacggtcagcagagccagggctactacagccagcac
ggccccccaccacactctggccagcagcaggccccctacccccagcaggtccacccctcc
cagggccaagggtctccgcaagggggtccaccccaggcacagccaccctacaaccaggga
ccaccccagcccccgcagcagccggggccccagcagggccagtccgggcccagctaccct
cagcagcaaggacccccggggcagcagcctccacagcagcaacccccctcgcagcagcaa
ggactcccgcagcagcagcaagatagggcggcccctccacaggcccagccacccccaggc
catcaacaacccccagtccaccagccaccccccggccaccaatcctctccgggccctcag
ggccagcacccatctccagttcacagtggacccccacagcagcagggtcagtctcagcag
ggccagccctcaccctactcccagaccccacccctgcagcagcagggtcagtctcagcag
ggccagccctcaccctactcccagaccccacccctgcagcagcagtcgcccttccatggg
tttccacctccgccacaggagctctcccaggactcgttcagctcccagtccagtgctccc
ccctccaaccagcccatgacttcaaacaagagtggcacagaggacagcatgcagggtcgg
ccttctagtttaccagacctctctggttccatagatgacctgccgacaggtacagagggg
gctctgagtccgggggtcagcacgtcgggggtgtccagtagccagggggaacagagtaac
cccgcccagtcacccttctcccctcacacctcgccccacttgcctggcatccgcgggccc
tccccgtcccccgtgggctcccctgccagcgtcaccccctcgcgctccgggcccctctca
cctgctgctgtgccaggtaaccagatgcctccccggccgcccagcgtccattcagacggc
agtctccacacatccatgggccagtcagccatgggccagtcagccatgggccaggacagg
gtgtacatgcgtaacccccagatgcctccccacgggtcgccgcagcaacctggctccgcc
ttatcccctcgccagtcatcgggaggccagatgcttcctgggatggggccctaccctcag
aacaactccatggggaactacggccctcagggtgtacagtacggaccacaaggttacccc
agacagcccggctacagtggcatgcccaacgccaactaccctggtggtccggggggcatt
ccaggccaggctggtggggcgccgtatgcaggcatgccccctggcaggatgggtccgggt
cagatggctgcccgcccctacggccccgggatgggccccaacatgggccccggcgtacct
ccacaggtgacctctgggatgtgcccccctccaggcatgaacaggaagggccccgggggc
cctccagatgcagcctctgccatgcaccacggagccaactctatactcaacaggcctcca
ggttacccccccaatatgccccaggggatgatgggagcagggcctccgtatggccctggg
ccgggggccatcaacagcatgcaaggtatgatgaaccagggaggaccttacggaggaggg
ccaatgggagggaacatggccaacaacacacctggcatggctcctagccctgagtttggc
atcgatgtcaaactgaacccagcccagaagatgaacaacaaggtggacggcacgtccaaa
cctgaaaccaagaagaagtcaaactcttcgacgacgaccaatgagaagataactcgtctg
tatgagctgggtccggagccggagaggaggacgtgggtagaccgttacctggcgttcgct
gaggagaaggccacgggcatgaccaaccttcccgccgtgggacgcaaacctctggacctc
ttcagactttacgtctcggtcaaagagatcggcggcctcacacaggtgaacaagaataag
aagtggagggagttgtccaccaacctgaacgtgggcacgtccagcagcgccgccagctct
ctgaagaagcagtacatccagtgtctgtacgccttcgagtgcaaggtcgaacgtggcgag
gacccgcccccagatctcttcactgacgccaaaaagaccacccagcccaagatccagccc
cccagcccagctgggtctggatctctgcagggcccccagaccccccagtccaccagtagt
tccatggcggaggggggagacctgaagccccccacgccagcctccacccctcacagccag
atgccccccatgcccgtcaggctgcaggacccgtttgcagatgggggtgacccagcattt
gccagacggaactccatgacccccaacagctaccagcctgggatgggaggcccggagatg
atgggtcacatggggccctacgaatccaacaaggacccctttggtggcatgaggaaagct
ggagagcaattcatgactccagggccgggccctaacagtggtatggaggggcagttcaac
agaggtcccccaggccccaacatgcagatgggtccgagacaacagtacccctacggacct
ggatatgacaggagacaggagccagggatgggtcctgatggcagtatgggtcctggggcc
ccccagcccaacctgatgccttcaggggccgactcggggatgtactcccctagccgagcc
ccaccgcagcaacgtcatgattcctatggtaatcagtatcctggtcaaggagcgccacct
ggtggcccctaccccaatcagcagccagggatgtttccacagcaacaacccaactacaag
cgtcctccagtggatggggcctacggtcccccagccaagcgtcatgagggggatgggatg
tacaatgtccccttcagcggtcagcagccagggccccagccctccggcggcccccagggc
caacaagacatgtacaatcagtacaacgcaggctaccccggctctgaccgccgaccacct
ggcccccagggccagttccctttccccttcggccgagaccgggggccctccagcgggggc
cccaactctcagtcccccatgcctccccaaatgatgggcggccctatgcaggcagcccct
gacggcccccagggccccatgtggcagggacgcaatgagatgggttaccccaactacccg
aatcgccaggggcctccaggacctggccaggggcccccccaggggtaccacagcatgaac
cgctctgaggagatgatgccaggggctgaccagcggatgaaccatgagagccagtggccg
ggacaccccatccagaggcagtccccctacgggccggggggctcggggccccccatgtcc
agacccctgcagtccaactatcagagctcccagaaccatatttcccaggtgtccagcccc
gcccccatgccccgccccatggaaagccggacgtccccctccaagtctccatacatgcac
tcaggcatcaagatgcagaaggcggggccccctgtgcccgcgtcccacataggccaggcc
cccgtgcagccccccctcatcaggcgggacatatccttccccccagggtcagtggaggcc
tcccaacccatcctcaaaccccgagggcgactcaccatgaaagacatcggcaccccagag
gcctggagagtgatgatgtctctgaagtcaggcttactagcagagagcacgtgggccttg
gacaccattaatattttactctacgatgacaacagcatttctaccttcaacctctgccag
ctgcccgggttcctggagctggttgtggagtatttcagacgctgcctcatccagatcttc
ggcatcctgaaggagtatgaggtgggagaccctggccagcggacgctcaccgacccgtat
gctgccgacgaggactggtctgacgaagagctgcccgagcaggaggacatggaggaggaa
gaggacgaagaggaggacgacgagaggaagagcaacgcagacaccaccacgtcgtcgcag
caggtccaggtgaaaaaggaggaggaagaggagaaatccacgcctgagaagtcgacggcg
gaggaggaggaggagagggaaggaggggagtcttcttccacctcctcgcccccccagaac
ctcagcctcctacaggagaaacccaaacaggccagtaagttcgacaagctgcccatcaag
atggtgcgtaagaaagaccccttccctgggggccgttccagtaagctaggccggcggcag
agctttgacagcggactgatccactggagcatcggcgggggggacaccacggaacatatc
cagacacacttcgagagccggtccgacctcctcaagcagaggaagcaggtgctgccatcg
gccaccgagagtagaaaggtcgccgtgcccccgacggtgtcagagaacccagaggagact
actaagcctggcaaggaagagcagaccaccaagacctccaccccaaccacgcccaccccg
gtcaccgccaccatcgacgatgtcctgtcggcccggccgggctcggtgacggaggaggcg
gtgcgaggagcagccgaggagcagaaggagaacaggggacagttcctgtactccctccgc
caggcgcagcagagccgacgcaacatcaccatcctggaggacgagcctcacagcaaggac
gagaccgcgctgagcacgctgtcggactggcaggacgccctggctcgccgctgtgtctgc
gtctccaacatcgtccgctcgctgtccttcatccccggcaacgacctggagatgtccaaa
cacccagggctgctactgctgctgggccgtctggtcctgctccaccaccgtcacccagag
aggaaacaggcccccgtcacctacgagaaggaggaggacgaggacgagaggatgagctgt
gagagggacgaatggtggtgggactgtctggaggtcctcagggagaactgcctggtcact
ctggctaacatctccggccagttggacttgtccatctacccagagagcatctgtctgccc
ctgctggacggcctgcttcattgggccgtttgtccttcggccgaggccctggaccccttc
cccatgctggggccccacggggccctatccccccagagactggtgctggagaccctcagc
aagctgagcatccaggacaacaacgtggaccttatcctggccacgcctccattcagccgg
ctggagaagctgtacgggacgctggtgcgtctggtcggggagaggaaggtggctgtctgc
agggagatgtctgtggtcttactggccaacctggcccagggagacagcatggcggccagg
gccatcgccgtgcagaaggccagcgtaggtaacctcctgggcttcctggaggacagtcta
gcagccacacagtaccagcagagccagagttccctgatgcacctacagggggcgcacttt
gagcccactagcgtagacatgatgcggcgagcggcccgcgccctgcacgccatggctaag
gtggaggagaaccattcagagttcaccctgtacgagtcccgcctactggacatctctgtc
tcaccactcatgaactctctggtgtcccatgtgatctgtgacgtactctttctgattggc
cagtcatga
DBGET
integrated database retrieval system
