Oncorhynchus kisutch (coho salmon): 109879631
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Entry
109879631 CDS
T09179
Symbol
hmbox1
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109879631 (hmbox1)
Transcription factors [BR:
oki03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
109879631 (hmbox1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_31
HTH_26
HTH_37
Motif
Other DBs
NCBI-GeneID:
109879631
NCBI-ProteinID:
XP_031656172
Ensembl:
ENSOKIG00005035647
LinkDB
All DBs
Position
LG21:41425119..41444537
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AA seq
499 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRTGMTKQEILHALDTLDRLDREHGDKFGRRYGGGANSS
VSDPNSTTTNNNNNNNNTASVSAATTSSTTSSSCGSNYNNGGSSNVNMALASSSTNSTAT
QTQYLPPRGGLSPSPSNGYDTSPPPGPPPSSAILSSPVSLVAMVQNGGRDSLAATPNGKL
SPPRYPMNSAAAVRPFGFEATEEELDIDDKVEELMRRDSSIVKEEIKSFLGNRRISQAVV
AQVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYQLEKTTPGATLNMCPAPMALEEMEWR
QTPPPISTAPGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAVIQKP
GKKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGGHSNSDDIDGGD
YTEQACDLPYFDKRPMARPFGFYRLEPTSPTQDDGPGHGDHQDPISLAVEMAAVNHTILA
LSRTGGVPSDIKTEALDDD
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattacacagacgagcctcgcttcaccatcgagcagatcgacttgctccagagg
ctgcggcgtacgggcatgaccaagcaagagatcctccacgccctggacaccctagaccgg
ctggaccgcgagcacggggacaagttcggtcgtcgctacggaggaggagcaaatagctct
gtgtccgaccccaatagcaccaccacaaacaacaacaacaacaacaacaacactgcctct
gtttctgccgccaccacctcctcaacaacatcctcttcctgtggtagtaattataataat
ggtggaagcagtaatgttaacatggccctggcctcatcctccaccaactctaccgccaca
cagacacagtacctccctccacgtggggggctctccccgtcgcctagcaacggctacgac
acctccccaccacccggcccgcccccgtcctctgccatcctctcgtccccggtgtcgctg
gtcgccatggtgcagaacggggggcgggacagcctggcggcaacgcccaatgggaagctc
tcgccgcctcggtacccaatgaatagcgctgctgccgtcaggccgttcgggttcgaggcc
acggaggaggagctggacattgatgacaaggtggaggagctcatgaggagggacagcagt
atcgtcaaggaggagatcaagtcctttctgggaaacaggagaatctctcaggctgtggtg
gctcaggtcacaggtatcagtcagagcaggatctctcattggttgctccagcacggctct
gacctcagcgaacagaagaagagagctttctaccgctggtaccagctagagaaaactacc
ccaggtgccactctaaacatgtgccctgcccccatggctctggaggagatggagtggaga
cagaccccaccccctataagcaccgcccccgggagcttccggcttcggcgtgggagtcgc
tttacctggaggaaggaatgtctggctgtgatggagagctacttcaatgacaaccagtac
cccgacgaagccaagagagaggagatcgccaacgcctgcaacgcggttatccagaaacca
gggaagaagctttctgacctggagagagtcacatccctcaaagtctacaactggtttgcc
aaccgacgcaaggagatcaagagacgggctaatattgaagccacgatcttggagagccat
gggatagacgttcagagtcctggaggacattccaacagcgacgacatcgatggaggcgac
tacacagaacaggcctgtgacctgccctacttcgacaagagaccgatggccagacccttt
ggcttctacaggctggagcccacttcacccacacaggatgatggtccaggccatggagac
caccaggaccccatctctctggccgttgagatggcagcagtcaaccacaccatcctggct
ctttcccggaccggaggggtgcccagcgacatcaagacagaggccctggatgatgactga
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integrated database retrieval system
