KEGG   Oncorhynchus kisutch (coho salmon): 109879866
Entry
109879866         CDS       T09179                                 
Name
(RefSeq) exosome complex component RRP4
  KO
K03679  exosome complex component RRP4
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109879866
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109879866
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109879866
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     109879866
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 ECR1_N_2 RRP40_S1 EXOSC1
Other DBs
NCBI-GeneID: 109879866
NCBI-ProteinID: XP_020327634
Ensembl: ENSOKIG00005017346
LinkDB
Position
LG23:20352879..20356742
AA seq 295 aa
MAANMRLPTIRKQVSLSSSLSALDGKDLVVPGDVITSDTGFMRGHGTYMDEEKLTASVAG
EVERVNKLICVRPLKTRFNGEVGDVVVGRITEVQQKRWKVDTNSRQDSVLLLSSVNLPGG
ELRRRSAEDELTMRVYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSL
IKRQKTHFHNLPCGASIILGNNGFVWLYPTPGHQDEEAGGYYTSLEPVSLSDREVISRLR
NCLLALGAHKVLLYDTSVLYCYESSLPHQIKDILKPEVMEEIVMMTRQKLVELEG
NT seq 888 nt   +upstreamnt  +downstreamnt
atggctgcgaatatgagattgccaactattcggaaacaagtatcgttatcatcctctctg
tctgctttggatggaaaagatctagttgttcccggtgatgtgatcacatcagatacaggg
tttatgaggggtcatgggacttacatggatgaagaaaaactaacagcctctgtggcagga
gaggtggagagagtgaacaagctcatctgtgtacggccgctcaagaccaggttcaacggg
gaggttggagatgtggtggttgggaggatcacagaggtgcagcagaagcgctggaaggtg
gacaccaactccagacaggactctgtgttgctgctgtcctctgtcaatctgcccggagga
gagctgaggagacggtcagcagaagatgagctcaccatgagagtctaccttcaggagggg
gacctcatcagtgcagaggtacagtctgttttctcagatggggcgctctctcttcacacc
cgcagtttaaagtatggaaagttggggcaaggagttcttgtgcagctatctccctctttg
atcaagagacagaaaacccacttccacaacctgccttgtggggcctccatcatcctgggc
aataatggctttgtgtggctgtaccccaccccaggacatcaggatgaggaggctggagga
tactacaccagtcttgagcctgtctctctctcagatcgggaggtgatctcacggttgagg
aactgcttgctggccttgggggcacacaaggtgcttctgtacgacaccagtgtgctctac
tgttacgagtcatcactcccacaccagatcaaggatatcttaaaaccagaggtgatggag
gagattgtgatgatgacacgtcagaaacttgtcgaactggagggttag

DBGET integrated database retrieval system