Oncorhynchus kisutch (coho salmon): 109880375
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Entry
109880375 CDS
T09179
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109880375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109880375
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109880375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
TPR_6
TPR_16
Motif
Other DBs
NCBI-GeneID:
109880375
NCBI-ProteinID:
XP_031673644
Ensembl:
ENSOKIG00005041782
LinkDB
All DBs
Position
Unknown
AA seq
716 aa
AA seq
DB search
MSTEATADQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAVQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYEAAQY
LDQSSKLLAEKGDMNNSKVFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRLKHEKVH
SIYNRLLAIEDIDPTLVYIQYMKFGRRAEGIKSGRIIFKKAREDMRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAALLQTETVVTPSAPTQKDEADRKPEYPKPDTSQMIPYQPRHLAPP
GLHPVPGGVFPVPPAAVILMKLLPPPTCFVGPFVQVDELMESFRRCTLPETVDAAVELIT
GRQPDAGGEGNGSMENHAMTKSLKRPNADSDEEEDKGAVAPPVHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggaagcaaccgccgaccaggcagctgagtatatcccggagaaggttaagaaa
gcagagaagaagttggaagaaaacccatatgaccttgacgcatggagcattctgattcga
gaagcacagaaccaaccaatagacaaagcaaggaagacgtatgaacgacttgtggcccag
ttcccaagctcgggcagattctggaaactattcattgaagcggagatcaaggcaaaaaac
tatgacaaggtagaaaagttgtttcagagatgtctgatgaaagtgctgcacatcgacctg
tggaaatgctacctctcctatgtccgtgagacgaaaggaaagctacccagctacaaagag
aagatggcgcaggcgtatgactttgcgctggataaaatcggcatggagatcatgtcctac
cagatatgggtggactacatcaacttcctcaaaggagttgaggcggttggttcatacgct
gaaaaccagcgaatcacggcggtgcgcagggtctaccagaggggctgtgtgaaccccatg
atcaacatcgagcagctctggagagactacagcaagtatgaggagggcatcaacgtacat
ctggccaagaagatgattgaggaccgcagcagagactacatgaacgctaggagagtggcc
aaggaatatgagactgtgatgaagggtctggataggaacgccccctcggtgcccccacag
aactccccccaggaggcggtgcaggtggagatgtggaagaagtacatccaatgggagaag
agcaacccgctccgcacagaggaccagacactcatcactaagagagtgatgtttgcctat
gagcagtgtctgttggtgctgggtcatcaccctgatgtgtggtatgaggctgcccagtat
ctggaccagtccagtaaactactggcagagaagggggacatgaacaactctaaggtgttc
agtgacgaagcagctaacatctacgagcgcgccatcggtactctactgaagaagaacatg
ctgctgtacttctcattcgctgactacgaggagagtcgattgaagcatgaaaaggtccac
agcatctacaaccgtctgctggccatcgaggacatcgaccccacgctggtctacatccag
tacatgaagtttggcaggcgggccgagggcatcaaatcaggccgcatcatctttaagaag
gcccgggaggacatgcgcacgcgtcaccacgtctacgtgactgcagcactgatggaatac
tactgcagtaaggacaaatcagtggcctttaagatatttgaactgggcttgaagaaatat
ggagacattccagagtatatacttgcatacatcgattacctctcacaccttaatgaggac
aacaacaccagagttctgtttgagcgtgttctcacctcgggaagcctgtcgccagagaag
tctggtgagatctgggcacgtttcttggcctttgagagtaacatcggggacctggccagt
atcctgaaggtggagcgcaggcgtttcacggccttcaaggatgagtacgaaggcaaggag
acggccctgctggtggacagatacaagttcatggacctgtacccctgttctgccagcgag
ctcaaagccctcggatacaaggacgtgtcccgtgccaaactggcggcgttgctccagaca
gagacggtggtgactccatcggctcccacgcaaaaggacgaggccgaccgcaaaccagag
taccccaaacctgacaccagccagatgatcccctaccaaccacgacacttggcccctcca
ggactgcaccctgttccaggaggggtgttcccggtccccccggccgcagtcatcctgatg
aagctactgcctccacccacctgcttcgtggggccctttgtgcaggtggatgaactgatg
gagagcttcaggagatgtacactaccagagactgtagatgcagcagtagagttgataacg
ggcaggcagcctgatgccggcggagaagggaacggttccatggagaaccacgccatgacc
aagtcactgaagagacccaatgcagactctgatgaagaggaggacaagggcgctgtggcc
ccacccgttcacgacatctaccgcgctcgccagcagaagaggatccggtga
DBGET
integrated database retrieval system
