Oncorhynchus kisutch (coho salmon): 109880689
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Entry
109880689 CDS
T09179
Name
(RefSeq) FACT complex subunit SSRP1-like isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109880689
03036 Chromosome and associated proteins [BR:
oki03036
]
109880689
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
109880689
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
109880689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
POB3_N
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
Motif
Other DBs
NCBI-GeneID:
109880689
NCBI-ProteinID:
XP_031653631
Ensembl:
ENSOKIG00005023112
LinkDB
All DBs
Position
LG19:complement(37333602..37361022)
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AA seq
712 aa
AA seq
DB search
MGDTLEFNEIYHESKGSWNDGRLRFSKQNVVYKSSKTGKVDNIPAAELSVATWRRVCLGH
GIKLATSNGHVYKYDGFRDTDYERISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FDVNDSSVFEIPLASVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPGPADEGADPVE
AFAQNVRSKADVIQATGDAVCVFKELQCLTPRGRYDILIYPAFLHLHGKTFDYKIPYTTV
LRLFLLPSKDQRQMFFVISLDPPIKQGQTRYHFLILHFSKEEELKLTLNMSEEEVEKRYE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGNTPGAQCITCSYKAQSGLLYPLERG
FIYVHKPPVHLRFEEISSVNFARGTTTTRSFDFEVETKQGNQFTFSSIEREEYGKLFDFV
NAKKLHIKNRGFKEKKAKNNEYSDSDDDQHDAYLERMKAEGKIREEGDGSNDSDEETDES
FNPGEESDVAEEYDSNASESDSGSGGDGSGDEGKKKPAKKAKVVKEKRERKPRKEKKQKD
TNAPKRPMSSYMLWLNSSRERIKSENPGISITEISKKAGEMWKQIGKEDKEEWDGKAEEA
KKTYEKAMKEYRESGGGSSTPAKKESKKKAGGKKEDKKRKSGGGEKEKEQGGNDSFKSRE
FISSEESSSDGERKKAKKAKKAKGKPQSRDKESEEEEEEAMTTPPSSEEDSD
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcaacgagatctaccatgaatccaaggggtcctggaacgac
ggtcgtctgcggttcagtaagcagaatgtggtgtataagagcagtaagaccgggaaggtg
gacaacatcccggcagcagagctgtctgtggccacatggaggcgtgtgtgtctgggacac
ggcatcaaactggcaaccagcaacggccatgtctacaaatacgacggcttcagagacacg
gattatgagaggatctctgagttcttcaaggccaactacaaggtggagctgacagagaag
gacatgtgcgtgaaaggctggaactggggcactgctaaattctctggtccattgttgtcg
tttgatgtgaatgacagctccgtgtttgagatccccctggccagcgtgtcccagtgtgcc
accgggaagaacgaggtgacgctggagttccaccagaacgatgacgctgaggtctctctc
atggaggtccgtttctacgtcccccccggccccgcagacgagggggcagaccccgtggag
gcgtttgcccagaacgtgcggtctaaggcagatgtgatccaggctacaggagatgctgtg
tgtgtcttcaaagagctgcagtgcctcacacccaggggcaggtatgatatcctcatctac
cccgccttcctgcacctccatggtaagacgtttgactacaagatcccctacaccaccgtg
ctgcgtctcttcctgctaccaagcaaggaccagagacagatgttcttcgttatcagtctg
gacccgcccattaagcagggacagacgcgttaccacttcctcatcctgcacttctctaag
gaggaggagctcaagcttaccctcaacatgagcgaggaggaggtggagaagcgttatgaa
gggaagctcagcaagaacatgtcaggttctctctatgagatggtcagcagggtgatgaag
gctctggtcaacaggaagatcactgtgcccggaaacttccagggtaacacccctggggcc
cagtgtataacgtgttcctacaaggctcagtccggcctgctctacccgctggagcgaggc
ttcatctacgtccacaagccccccgttcacctgcgcttcgaggagatctccagtgtcaac
ttcgccagaggcaccaccaccacgcgctccttcgacttcgaggtggagaccaagcagggg
aaccagttcaccttcagcagcatagagagggaagagtacgggaagctgtttgactttgtc
aacgccaagaaactccacatcaagaaccgaggattcaaggagaagaaggctaagaacaac
gagtacagtgactcagacgacgatcagcacgatgcctacctggagaggatgaaagccgag
ggcaagatcagagaggagggagacggcagcaacgactcagacgaagagaccgatgagtct
ttcaaccctggagaggagagtgacgtcgctgaggagtatgacagtaacgcgtcggagagc
gacagcggcagcggaggggatggcagcggtgatgagggaaagaagaaacctgcaaagaag
gccaaagtcgtgaaagagaagagggagaggaaaccacgcaaagagaagaagcagaaggac
acgaacgcccccaagaggccgatgagttcctacatgctgtggctcaactccagccgcgag
cgcatcaagtctgaaaaccccggaatctcaatcacagagatctccaagaaggcaggagag
atgtggaaacagatcgggaaggaggacaaagaggaatgggacgggaaggcagaggaggct
aaaaagacctatgagaaagccatgaaggaatacagagagagtggtggaggctcctccaca
ccagccaagaaggagagcaagaagaaggcgggaggcaagaaggaggacaagaagaggaag
tctggtggaggagagaaagaaaaggagcaaggagggaacgacagctttaagagccgagag
tttatctccagcgaggagagttcatctgacggtgaacgcaagaaggccaagaaagccaag
aaggccaaaggcaaaccccagagcagggacaaggagtctgaggaggaagaagaggaagca
atgaccacaccccccagctctgaagaggactctgactga
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