Oncorhynchus kisutch (coho salmon): 109880883
Help
Entry
109880883 CDS
T09179
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04137
Mitophagy - animal
oki04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109880883
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
109880883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109880883
03009 Ribosome biogenesis [BR:
oki03009
]
109880883
04131 Membrane trafficking [BR:
oki04131
]
109880883
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109880883
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
109880883
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
109880883
Membrane trafficking [BR:
oki04131
]
SNARE
SNARE associated proteins
Others
109880883
Autophagy
Aggrephagy
Other aggrephagy associated proteins
109880883
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
109880883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
nSTAND3
AAA_28
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_7
AAA_18
ATPase
ABC_tran
DUF815
AAA_24
NB-ARC
TsaE
ResIII
Viral_helicase1
Sigma54_activat
NACHT
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
109880883
NCBI-ProteinID:
XP_020328658
Ensembl:
ENSOKIG00005000861
LinkDB
All DBs
Position
LG3:32303843..32328382
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKTRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRESVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPNPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRF
GRFDKEVDIGIPDATGRLEILQIHTKNMKLNDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWGDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRECIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSNAAGG
SGPSQGTGGTGGGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggaggagaatccaaaaatgatgacctttccactgcgattctgaagcagaag
accagaccaaacagattgattgtcgatgaatccatcaatgaggacaacagtgtggtctct
ctctctcaggcaaagatggatgagctgcagctgttccgtggcgacacagtgctgatgaag
gggaagaagcgcagggagtctgtgtgtattgtcctgtctgacgacacctgctctgatgag
aaggtccgcatgaaccgtgtggtccgcaacaatctccgtgtccgtctgggggatgtcatc
agtattcagccgtgtcctgatgtaaagtatgggaagaggattcatgttctgcctattgat
gacacagtcgaagggatcactggcaacctgtttgaggtctacctaaaaccctatttccta
gaggcctacaggcccatccgcaagggtgatatcttcctggttcgggggggtatgcgtgcg
gtggagttcaaggtggtagagaccgaccccaacccctactgcatcgtcgccccagataca
gtcatccactgcgagggcgagcctatcaggagagaggatgaggaggagtccctgaatgag
gtgggctatgatgatatcggaggagtgaggaagcagctagctcagatcaaggagatggtt
gagctgcctctcagacaccctgcactgttcaaggctataggagtcaagcccccccgtggt
atcctgctatacggacctcccggtacaggaaagaccctgattgccagagctgttgctaac
gagaccggagccttcttcttcctcatcaacggtcctgagattatgagtaagctggctggg
gagagtgagagcaacctgaggaaggcctttgaggaggctgagaagaactctcctgccatc
atcttcattgatgaactggacgctatcgctcccaagagagagaagactcatggagaagtg
gagaggcgtatcgtgtctcagctgctgaccctgatggacgggctgaagcagagagctcat
gtcatcgtcatggcagccaccaacagaccaaacagcatagatgctgcacttagaagattt
gggcgttttgacaaggaggtggacattggtatccccgatgctacaggcagactggagatt
ctgcagatccacaccaagaacatgaaactgaatgacgatgttgaccttgagcaggtggct
aatgagacccacggccacgtgggtgctgatctggctgccctgtgctcagaggctgctctc
caggccatcaggaagaagatggacctcatcgacctggaggacgagaccatcgatgcggag
gtcatgaactcccttgcagttaccatggacgactttaggtgggctctaagccagagtaac
ccatcagctctgagggagacagtggtggaggttcctaacatcacctggggggacatcgga
ggactggaagacgttaagcgggagctgcaggagctggtgcaatacccagtggagcaccca
gataagttcctgaagttcggtatgactccttcaaagggagtgttgttctacgggcctccg
ggttgcggtaagaccctgctggccaaggccattgccaacgagtgccaggccaacttcatc
tccattaaaggacctgagcttctcaccatgtggtttggagagtcagaggctaacgtcagg
gagatctttgacaaggctcgccaggcagccccatgtgtgttgttctttgacgagctggac
tctatagcgaaggcccgtggaggtaatgtgggagacggtggcggtgcggccgaccgtgtc
atcaaccagatcctgactgagatggacggcatgtccagcaagaagaacgtcttcatcatt
ggagccaccaatcgccctgacatcatcgaccctgccatcctccgacccggccgtctggac
cagctcatatacatccctttgcctgacgagaagagcaggatcaatattctcaaggctaac
ctccggaagagccccattagcaaggatgttgatctggacttcctggctaagatgaccaat
gggttctcgggtgctgaccttacagagatctgccagcgggcctgtaagctggctatcaga
gagtgcattgagaacgagattcgccgagagagggagaggcagaccaacccctctgctatg
gaggtggaggaagacgaccctgtgcctgagatcaggaaggaccactttgaggaggccatg
cgattcgcccgccgctctgtcagcgacaatgacatccgcaaatacgagatgtttgcccag
acactgcagcagagccgaggatttggcagcttcaggttcccctccaatgctgcagggggc
agcggtcccagccagggtactgggggcactggtggggggccagtgtttaacgaggataat
gatgatgacctgtacggatag
DBGET
integrated database retrieval system
