Oncorhynchus kisutch (coho salmon): 109880936
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Entry
109880936 CDS
T09179
Name
(RefSeq) caprin-1 isoform X1
KO
K18743
caprin-1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109880936
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
109880936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
Fes1
Motif
Other DBs
NCBI-GeneID:
109880936
NCBI-ProteinID:
XP_031657413
Ensembl:
ENSOKIG00005008082
LinkDB
All DBs
Position
LG22:complement(52672115..52715623)
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AA seq
852 aa
AA seq
DB search
MELKAVGWNFKMPSAMNGNRTVQSASPDVGSAPGQITLGGGQSSGAQTEAMKQVLGVVDK
KVRNMEKKKGKLDDYQSKKNKGERLNQDQLDALTKYQEVTNNLEFARELQKSFLSLGQDI
QKAVKKAARREQLQREESEQKRLKTVLELQFLLDRLGEDSVRQELRQGAASVDTPSLLTD
TELTALDELYKLVGPEPDQNTRFTDQYEEASQHLMDLLEGKDKAVAGTTYKALKDSLNRV
LLSGYFDQAQSHQNGVCEETEEQAVALVEETEEQAVAVVEETEEQAVDPEGEIVEEYIEP
IEVEATEFVNRQFILDTTYSDKEQGDEWTTETEVVRTILQLPVQSAPPPITTEAQSLNRA
TPPGTPPADSVVRKQEVQNLLSQMQGPYNFMQDSMLEFDGQLIDPAIVSAQPIDPAIVSA
QPIDPAIVSAQPIDPAIVSAQPIDPAIVSAQLINPAIVSAQPIDPAIVSAQLIDLAIVSA
QPIDPAIVSAQLIDPAIVSAQPIDPAIVSAQLINPAIVSAQLINPAIVSAQPIDPAIVSA
QPIDPAIVSAQPMKPPTQNIDLPQMGCPPAHPESCLSPHTVSVQPEPTQVPMVSPTPEVY
STPPPMFHSSHTAESRPQTDSIDTIQVSLSSEQPPASSSQTQEVFQSVNGPKPPHSSGIN
VNAAPFQSMQTVFNLNAPVPPANETEALTQASQYQNSYSQQGFSSQSQQTEMQTEQLQSV
VSAFHSQDLSLPSQDLSHGQQLSQQGTGFGPGASHQAQSFYNSRGMTRGGPRNANGYRGC
DSYRSTFTNTPNSGYQQAQFNTPRDYSNGGNYQRGDGYNQVDREMLNQNYKRGAGQGSRG
VSRGGNAQAIRS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggagttgaaggctgttgggtggaatttcaagatgccctcagcaatgaatggtaacagg
acagtgcagtcggccagcccagatgtgggatctgctcctggacagatcaccttgggcgga
gggcagtcctctggggcccagaccgaggcaatgaagcaagtcctgggagtcgtcgacaag
aaagtccggaacatggagaagaaaaagggcaagctggacgattatcaatctaagaagaat
aaaggggaacgtctcaaccaggaccaactggatgccctgaccaagtaccaggaagtgact
aataacctggagtttgccagggagttacagaagagcttcctgtcactgggacaagatatc
cagaaggcggtaaagaaggcagcgcgaagggagcagctccagagagaagagtctgagcag
aagaggctgaagactgtcctagagctccagtttctcctggacaggcttggagaggacagt
gtgaggcaggagctgagacaaggggctgccagtgttgacacaccctcactcctcaccgac
acagagctcactgccctggacgagctctataaactagtgggaccagaaccagaccaaaac
accagatttactgaccagtacgaggaggcttctcaacacctcatggatctgttggagggg
aaggacaaagctgtggcaggaactacatacaaagctctgaaggacagcctgaaccgagtg
ctgctaagtgggtactttgaccaagcccagtctcaccagaatggagtgtgtgaggagact
gaggagcaggccgtcgctctagtggaggagaccgaggagcaggccgtcgctgtagtggag
gagaccgaggagcaggccgtcgacccagagggcgaaatagttgaagagtacatagagccc
attgaggtggaagctacagagttcgttaacagacaattcattctagacaccacatacagc
gacaaggagcaaggagatgagtggaccactgaaacggaggtggtgagaaccatcctgcaa
ctgcctgtacagtcagcccctccccctatcaccacagaggcccaatccctgaacagggcc
acgcccccaggcacaccccctgcagactcggtggtcaggaagcaggaggtccagaacctc
ttgtcacagatgcagggaccttacaacttcatgcaggactcaatgctggagtttgatggg
cagctcatcgacccggccatcgtatcggcccagcccatcgacccagccatcgtatcggcc
cagcccatcgacccagccatcgtatcggcccagcccatcgacccagccatcgtatcggcc
cagcccatcgacccagccatcgtatcggcccagctcatcaacccagccatcgtatcggcc
cagcccatcgacccagccatcgtatcggcccagctcatcgacctggccatcgtatcggcc
cagcccatcgacccagccatcgtatcggcccagctcatcgacccggccatcgtatcggcc
cagcccatcgacccagccatcgtatcggcccagctcatcaacccagccatcgtatcggcc
cagctcatcaacccagccatcgtatcggcccagcccatcgacccggccatcgtatcggcc
cagcccatcgacccggccatcgtatcggcccagcccatgaagcctccaacacagaacata
gacctgcctcagatgggctgtcccccagcccacccagaatcctgcctctcaccacacact
gtttctgtacagcctgagcccacacaagtccccatggtgtcccccacgcccgaggtctac
tccacgccgcctcccatgttccactcgtcacacacagcagaatcccgaccgcagaccgac
tccatcgacaccatccaggtttccctgtcgtcagagcagccccctgcctcctcctctcag
acccaggaggtcttccagtctgtcaacggccccaaacccccacacagctccggcatcaat
gtcaacgcagcaccattccagtccatgcaaacagtattcaacctcaacgcccctgtccca
ccagccaatgagacggaagccttgacccaggccagccaataccagaacagttacagccaa
cagggcttcagcagccaatcacagcagacggagatgcagacagaacagctgcagtctgtg
gttagtgccttccactcccaggacctatccctgcccagccaggacttgtcccacgggcag
cagctcagccagcagggtacagggtttggccctggggccagtcaccaggcccagtccttc
tacaacagcagaggcatgacccgcggagggccacgtaatgccaacggctacagagggtgt
gacagttaccggtctaccttcaccaacactcctaactctggataccaacaggcccagttc
aacacacctagggactactccaacgggggcaactaccaacggggggacggttataatcag
gtagaccgtgaaatgctgaatcagaactacaaacgtggtgcgggtcagggatccagaggt
gtgtctcgaggaggcaatgcccaggccatcaggtcctga
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