Oncorhynchus kisutch (coho salmon): 109881120
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Entry
109881120 CDS
T09179
Name
(RefSeq) neuronal PAS domain-containing protein 1-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109881120
Transcription factors [BR:
oki03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
109881120
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
109881120
NCBI-ProteinID:
XP_031652753
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All DBs
Position
LG18:complement(42602300..42641631)
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AA seq
778 aa
AA seq
DB search
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPSTL
NEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQSHE
DLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVISRTELPDTPL
DLLQLPESLRAERLKASSSPSEHSPQTRGPQPMKSSVCKGDPDSKPREIYNPGVQSGDRR
KRPLRSDSEGAPAETRRRLEEFRQRERSVSASSDLGSESGGEEREWEHGGDSASVKREEG
PSKRAGETPVRGGGVHNGRAVIQHLKSVVSSPLSGRPNIKTEHEALIAGGRWTHTHTSSH
IQPLPSHTHTPCGSLNGDSPLTPIPDSSSSSEAPPNGIFTPPSPSMSPPMSGSSPLPCEE
RGMLSGGRGGGPDFELLHRLAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPPELPHS
HLGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCVNGLRGAAGSEED
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaacccccaaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggccatcaccagccagctggacaaggcctcggtcatccgc
ctcaccatcagctacttgcacatgcgcaccttcgctagccagggagacccgccctggtgc
cccctgctggaaggagagaaccactgcagcaaagtgcgacgctcctcccactctctggcc
actgacatgttcgaacagcacctgggagcacacctgttacagtccctggacggctttgtg
tttgtggtaagctcagagggacgcttcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgacgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggcagagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccccgagagcgcttccagctctgcctccacatcctccctggccgggaccccc
gagcctgccccctcaagccccctctctcctgggaatgaacctcctgaccgaggcttcttt
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctccgcccgc
tcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctcccgccctccacgctg
aacgaggtgcgcatggagagccagatgtttgtcttccgggtcaacatggatttgcaggtc
acctactgcgagaacaggatctcagagtatatggacctgagcccggcagaggtggtggga
cacacctgctaccacttcatccacgtggaagacctggataacatcagacagagccatgag
gacttgttgaggaagggtcaggtggtgaccgggtactaccgctggctccagaggagaggg
ggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccccacgaa
cgcaacgtcatctgggtcaactacgtcatcagtcggacagagctcccagacactcccctg
gatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcctcccct
tcagaacactcgccacaaacccggggcccacaaccaatgaaaagctctgtgtgtaaaggt
gaccctgactcgaaaccaagagagatctataatcccggtgtccaatcaggggacaggagg
aaacgtccgctgcggtctgactctgagggtgctcccgcggaaacgcggcgtcgcctggaa
gagttccgccagagagagcggagtgtgtcagcctcctcagacctgggcagtgagagcggg
ggagaggagagagagtgggagcatgggggagacagcgcgagtgtcaaacgagaggagggg
ccttcgaaacgagctggggagaccccagtgaggggcggcggggtgcacaacggccgtgca
gtaatccagcacctgaagagtgtagtgtcctcgcctctctctggccgccccaacatcaag
actgaacatgaggcactgatcgcagggggtcgctggacacacacacacacctcctcacac
atacaacccctaccctcacacacacacacaccctgcggcagcctgaacggcgacagtccc
ctcacccctatcccggactcctcctccagcagtgaagccccacccaatggtattttcaca
ccgccctccccctccatgtcccctccgatgtccggctcctcccctctaccgtgtgaggag
cggggaatgttgtctggaggcagggggggcgggccggactttgagctgttgcatagactg
gcagcggggggtgctgcaggacgggtgttgtttcaccccctggccctcggcccccagggg
ccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctgccccactcc
cacctcggtgctgaggggctgcgctccgaccaccacaagggccccccagccttcttcccc
cacctccagaggctggccggcctgccctccttcagtgggttctccgcctcggacaatccc
ttcaaccccttctgtgtgaacggactgaggggggccgcggggtccgaggaggactga
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