Oncorhynchus kisutch (coho salmon): 109881149
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Entry
109881149 CDS
T09179
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03022
Basal transcription factors
oki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109881149 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
109881149 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109881149 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109881149 (gtf2h1)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109881149 (gtf2h1)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109881149 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
109881149
NCBI-ProteinID:
XP_031688803
Ensembl:
ENSOKIG00005016173
UniProt:
A0A8C7G820
LinkDB
All DBs
Position
LG10:complement(5902417..5922426)
Genome browser
AA seq
550 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNLHFSNESTALKDRDAAKDLLQQLLPKFKKRANKELEEKNRMLQE
DPVLFQLYKDLVVCQVISAEEFWANRLSINNVDHSLSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHNMTEKEFWTRFFQSHYFHRDRINTGLQD
IFSECAKQDEKGLKSMVFQGVKNPMVDLLSLEDKSLDEGYGSNSTAPSTSNTNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADAPNGQACETSSTDGNSRDSDFFQPPIKKVKIQDVI
EYEDLHRENGKKTVALNLKKSDRYSHGPVPLLPQQYTTSQDIVNSVNCIKQEIASYKPCL
TQVMSSSTASCAIAALSPGGVLMQALAQQAINQMVPNDVQGELKHLYTAAGELLRHFWSC
FPVNTLFLEEKVVKMRSNLERFQMTKLRPFQEKVQRQYLSTNLTGHLEDMFQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttgtcggaggaggtgctgctggtggtgaagagggtccgacagaggaagcag
gacgggaccctctacctgatggcagagaggatagcctggggaccagaggggaaggaccgt
ttcaccgtcagccacctgtatgctgacatacgctgtcagaaaatcagcccagacggcaag
gccaagattcagctacagttggtcctacacacgggggagagcaccaacctccacttctcc
aatgagagcactgccctgaaagaccgcgatgcagccaaggacctcctccagcagctgctg
cccaagttcaagaagagggctaacaaggaactggaggagaagaacagaatgttacaggaa
gatccggtgctgttccagctgtacaaggatctggtggtgtgtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcataaacaacgtggaccactccctctccaacaacaag
caggaagttggcatctcggcagccttcttggcggacatccggccccagacagatggctgt
aacggccttagatacaaccttacatctgacattatcgagtcaatcttcagaacgtaccct
gcagtgaaacagaagtatggtgagaacgttcctcataacatgacagagaaggagttctgg
acgcggttcttccagtcccactacttccaccgagaccgcatcaacacgggcctgcaagac
atcttctccgagtgtgcaaagcaggacgagaagggcctgaagtccatggtgttccaagga
gtgaagaacccaatggtggacctgctgtcactggaggataagtcgttagatgagggttat
gggtctaactccacagcaccttctacgtccaatactaacaagaccgtgaaggagaacagt
aactctgccataatcaagaggttcaaccaccacagtaccatggtgctggcagcaggctcc
ggaaagaaagcggatgctcctaacggtcaggcctgtgagactagcagtacagatggaaac
tctagggattcggacttcttccaaccacccattaagaaggtgaaaatacaagatgtcata
gagtatgaggaccttcatagggagaatgggaagaagacagtggctctgaacctcaagaag
tctgacaggtactctcatggtcccgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcgtcaactctgtcaactgtataaagcaggaaatagccagctacaaaccctgcctt
actcaggtgatgtccagcagtacagccagttgtgccatcgctgccctctccccagggggt
gttctcatgcaggcattagcacagcaagccattaaccagatggttcccaatgacgttcag
ggggagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacacttttcctggaagagaaggtggtaaagatgcggtccaacctggag
agattccagatgaccaagctccgccccttccaggagaaagtccagcgtcaatacctgagt
actaaccttactggtcaccttgaggacatgtttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
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