Oncorhynchus kisutch (coho salmon): 109881765
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Entry
109881765 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109881765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109881765
03036 Chromosome and associated proteins [BR:
oki03036
]
109881765
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109881765
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109881765
mRNA degradation factors
5'-3' decay
Decapping complex
109881765
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109881765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109881765
NCBI-ProteinID:
XP_020329469
Ensembl:
ENSOKIG00005014390
LinkDB
All DBs
Position
LG13:70880207..70895957
Genome browser
AA seq
486 aa
AA seq
DB search
MSTARTENPTSLMGLNKPNGQFRGPLKPVGLTPGSLATTPQPDDHQRGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSAEPDTEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacggagaacccaacatcgttaatgggactgaacaagcccaacggg
cagtttagaggaccactcaagccagttggactaacaccaggatccctggcaactacccca
caaccagatgaccaccagaggggaggcaacattccccagggcagtgggggcatccgtttt
ggcgatgactggaagaagtgcctgcagcttccacagaaggactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagttcgaagactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatcctggcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcttggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctacacgagagttggccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacgggaggcaccaacctgagggacgac
atcatgcgcctggacgagactgtgcatgtggtgatagccacaccgggcaggatcctggac
ctgataaagaagggcgtggccaaagtggacaaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctcatcgaagacatcatcagcttcctggct
aaggggcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgacactgaagggc
atcacccagtactatgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccatcatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtacagaaaccgtgtcttccatgacttcagaaacggactctgcaggaacttg
gtctgcacagatctgttcaccaggggaattgacattcaagcagtgaacgtagtgatcaac
tttgacttccccaagaatgctgagacgtacttgcatcgcatcggcagatcagggaggttc
ggtcacctgggtctggccataaacctgatcacctctgaggaccgcttcaacctgaagtcc
attgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcagagttccactctgccgaaccagacaccgaagacgagatcagaggcaaggac
ggcgagttaagtgcagcataa
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