Oncorhynchus kisutch (coho salmon): 109881932
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Entry
109881932 CDS
T09179
Symbol
lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109881932 (lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
109881932 (lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109881932 (lsm2)
03041 Spliceosome [BR:
oki03041
]
109881932 (lsm2)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109881932 (lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
109881932 (lsm2)
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109881932 (lsm2)
Complex C
U2 snRNP components
109881932 (lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
109881932
NCBI-ProteinID:
XP_031678172
Ensembl:
ENSOKIG00005027571
UniProt:
A0A8C7HW00
LinkDB
All DBs
Position
LG4:complement(3483318..3490481)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcctttttcaagtccctggtggggaaggacgtggtggtggagctcaaa
aatgacttgagcatctgtggaacacttcactctgttgatcagtacctgaacattaaactg
acggacatcagtgtcacggatccagagaagtatccacatatgttatcagtgaagaactgt
ttcatccgaggctctgtggtgcggtacgtccaactgcctgcagatgaggttgacactcag
ctgttacaggacgctgctcgcaaggaggcactgcagcagaagcaatga
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