Oncorhynchus kisutch (coho salmon): 109882790
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Entry
109882790 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109882790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109882790
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109882790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
ANAPC3
TPR_8
TPR_7
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
109882790
NCBI-ProteinID:
XP_031667773
Ensembl:
ENSOKIG00005034439
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MADNNTDQEKAIAANALEAFTAGNYEESLKHLGKLQELNKEDYKIALNKAIAEFYKSGQT
TTCTLKQTLIAMKNQVHTSMEDIDGLDDVENSLLYYNQAIIHYHMRQYSEAIAIGERLYQ
FLEPFEEKFALAVCFLLVDLYLLTYQPEKALHLLAVLEKLSVQGNNKNGKGESVNSANKD
GRNQKAEFIGMIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNTAGNSASSLFLKSNF
EYLRGNYRKAVKLLNSSNIAEHPGAIKTGECVRCMFWNNLGCIHFAMGKHNLGIFYFKKA
LQENDHTCAQLGDGGATGNGQSKQFSGIPMCALLANKRYELLYNCGIQLLHIGRPLAAFD
CLMDAVQVYHSNPGLWLRLAECCIAANKGSLEQDNKGLPSKKGIVQAIVGQGYHRKIILA
SQSTQNTIYSDGQSAAIPVASMEFAAICLRNGLVLLPDHQQQENKAENGSKTTSQSGSTE
SGSENSDACSGKVQEGDKFLSAAPSSPLRKQEVENLRCSLLACSAYVALVLGDNLMALNH
AEKLLHQTKLSGSLKFLGHLYAAEALISLDRISEAIGHLNPENVTDVSMGVLSSEQDQGP
DKGDLEPVESSGKQTPLCYPSTVSSARAIMLFNLGSAYCLRSEYEKARKCLHQAASMVNT
KEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSVLQAPSPDTRKKPVPSSFQPVQPP
IQMPSPFTTVQRK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacaacacagaccaagaaaaagcaatagctgcaaatgcgttggaggcgttt
acggctggaaactatgaggaatctttgaaacaccttgggaagctgcaagagttgaacaag
gaggactacaagattgctttgaataaagcaatagctgaattctacaagagcggccaaacc
accacatgcaccctgaagcagactcttattgcaatgaaaaaccaggttcacacttcaatg
gaggatattgatggtttggatgatgtagaaaacagtcttctctactacaatcaagctatc
attcactaccacatgagacagtactccgaagctattgctattggagagaggctgtaccag
tttctggagccgtttgaagagaagtttgctctggcggtctgcttcttgctggtggatctg
tacctgctaacgtaccagccagagaaggccctccatctccttgctgtgctggagaaactg
tctgtacagggaaataacaagaacggcaaaggggagagtgtcaacagcgccaacaaagat
ggtcggaaccagaaggcagagttcattggcatgatcgaagcagcaaaatccaaaatgcac
cagtacaaagtgcgagcgtacattcagatgaagtcatcaaaggcctgcaaaagggagatc
aagtctgtgatgaacacagcagggaattctgcttcctcactcttcctcaagagtaacttt
gagtacctgagaggaaactaccgcaaagcagtgaagctcttaaacagctccaacatcgca
gagcaccctggggccatcaaaacaggtgaatgtgtgcgctgtatgttctggaacaatctg
ggttgcatacactttgccatggggaaacacaacctaggtatattctacttcaaaaaggcc
ctgcaggagaacgaccacacgtgtgcacagctgggggacggtggggcgacggggaacggg
caatctaagcagttctcgggcatccccatgtgtgcgctgctagccaacaagcgttatgag
ctgctgtataactgtgggatccagctgctgcacatcggccggcccctggcggccttcgac
tgtctgatggatgctgtgcaggtgtaccactctaaccctggcctctggttacggttggct
gagtgctgcattgctgccaacaagggtagcttagaacaagacaacaagggtcttccgagt
aaaaagggtatcgttcaggccatcgttgggcagggctaccatcgcaagatcatcctggca
tcacagtccacccagaacacaatctacagtgatgggcagtctgcagccattccggtggcc
agtatggagtttgcagcgatctgtctgaggaacggcctggtcctcctccctgatcaccag
cagcaggagaacaaggcagagaacggctccaagacaaccagccagtcaggcagcacagag
agcggctcagagaacagcgacgcctgcagtgggaaggttcaagaaggagacaagttcctt
tctgcagcaccgtcttcacctctgaggaaacaggaggttgaaaacctcaggtgttccctc
ctggcctgcagtgcctacgtggccctggtgttaggagacaacctgatggccctgaaccat
gcagagaagctccttcaccagaccaagctgtctggatcactcaagttcctgggacacctg
tatgctgcagaggccctcatatccctggaccggatctcagaggccatcggtcacctcaac
ccagagaacgtcacggatgtctccatgggggtgttgtccagcgagcaggaccaagggcca
gataaaggagatctggagcctgtcgagtcatcagggaagcagactcctctgtgttacccc
agcacagtgagctcagcccgggccataatgctgttcaacctgggcagtgcctattgtctg
aggagtgagtacgagaaggcccgcaagtgcctgcatcaggccgcctccatggtgaacacc
aaggagattcctcctgaagccatcttactggctgtctacctggagctgcagaatgggaac
acacagctcgccctgcagatcatcaaacgtaaccagctcctcccctcagtgctccaggcg
ccctctccagacacacgaaagaagcctgttccctcctccttccagcctgtccaaccaccc
atccagatgccctcacccttcacaacagtccagcgcaaatga
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