Oncorhynchus kisutch (coho salmon): 109883194
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Entry
109883194 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109883194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109883194
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109883194
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109883194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109883194
NCBI-ProteinID:
XP_031643166
Ensembl:
ENSOKIG00005033935
LinkDB
All DBs
Position
LG13:complement(74341041..74352153)
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AA seq
957 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSPA
TCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLSFSSSANSGSSSSSSLVSMAAIVGGN
PGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTAPSL
PTATTPISASSNSLPQVSPGHILNSSLGLGLGLGKVGMMGTSSANSMSGLGLTGMSASLN
TMAGLLSGSTHAPYAQAASLGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGLGLL
GSSPAHGTLTGGILGLVPGQSVIPGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGVVG
SNTAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQHMDNGPS
LISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSALAP
EPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSSA
APGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIRQ
YLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSW
RFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggataat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagaca
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagttaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgctcatgctatcagctct
gcagcgctggtggccacctctccaacgggcatggggaacatagaggatgagatgttcctc
cactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccggcc
acctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagtgac
gttagtcagtctcctgcgaagaatggcacttcctccttgttgtccttttcctcgtccgcc
aattccgggtcctcttcttcctcctctcttgtatccatggccgctattgtcggaggcaac
cctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtacaacaacat
cagcctcaacctccacagcaaccagtcctgcagccactgcaacaaccacaacaaccccaa
acaaaaccttgcacccccagcccacccagccacccccttctctccaccgccccctctctc
cccacagccaccacacccatctcagcctcctcaaactccctgccccaggtctcgcctggt
catatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatgatgggg
acaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctctctgaac
accatggcaggcctactctctgggtccacccatgccccttacgcccaggcagcctcgttg
ggaggcctgggtctgagtaccactacccagtccagtgtctcagtggagagctcctccatc
cccacctcttgttccagtggagtgaccaccaacggagctgggacaggcctgggcctgctg
gggtccagcccagcacacggcacactgactggggggatcctgggcctggtgcctgggcag
agtgtgatccctgggccccctctgatccctctcagcccggttggagctgcccctgggggg
gcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagtagttggg
tcgaacacagcccctgccagaccgcccagtggactgaagcagaacggaagcacaagttac
agtgctgtggtggcagagagcaccgcagagtccgccttcagcacacccagccaatcacag
agcagccagccttcctcgctgacctcctcagccagtcagcatatggacaacggtcccagc
ctcatcagctccatcaccttgccccccagctctccgtccccctcgttttccgacagtatc
cccggtggagggagtctcctcaacggaccccactcctacacacaggcctctgagggcctc
aagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgctggcccca
gagccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgtcaggcc
ccagagcctctgagttctctgaaggcaatggctgagagagcagcattaggatcaggtctg
gatggcgagatccccaacctgcacctcacagacagagacatcttctctggttcgtcggct
gcccccggaacgcccgcggccccccagccctccctgtcggaggtgagcatccccccttcc
ctgggggtgtgtcccctgggtcccactccgctctccaaggaccaagtgtaccagcagacc
atgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatcaggcaa
tacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccaccac
tcagactctatagagttctaccagagactgtccacagagacgctcttcttcatcttctac
tacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcgtgg
aggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagactatcact
gatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcagaggaag
aaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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