Oncorhynchus kisutch (coho salmon): 109883294
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Entry
109883294 CDS
T09179
Name
(RefSeq) DNA repair and recombination protein RAD54B-like
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109883294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oki03400
]
109883294
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109883294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
109883294
NCBI-ProteinID:
XP_031643390
Ensembl:
ENSOKIG00005025466
LinkDB
All DBs
Position
LG13:77583364..77603489
Genome browser
AA seq
939 aa
AA seq
DB search
MRRSGAPSQVFGNMAKKPRFVPPGASLAGRPDPPVGTLLEPEPLAPKLSPVNVLYKVQRS
LSAPAPPLALPVKAFSLAKSSSQAPGLSRALARVLGAADSKKNELEPEDPSFTEENTGDP
ADFRCSSQSPAGCCGPVGAGSGSGAGSDGPRYFSVMWCKASGRKHKRWQGDAVLVTRGRT
ATLKDMEGKDIGKGSGYKVSELASLGEGETLMIGAKQVEVMGLISELNYNKGRCFLDVHV
EKEEPKISAPPPSQRPASKPFCRPTLLGGETDRGVAKPQEEGPCKPRHDPLAPGAIVMPR
PSTNHQWTYNKAGLPLVDVVVDPYLTSHLRPHQRDGLLFLYECVMGMRATCRYGAILADE
MGLGKTLQSVALTWTLLKQGPYGGKPVAKLVLVVAPGSLVQNWGAEFKKWLGRERINVYT
VNQDHRVELFAASPLHSVLVISYEMLLRSLEVVQKLEFGLVICDEGHRLKNSSIKTSSAL
SGLSCTRRVILTGTPVQNDLQEFYAIIEFVNPGILGSSAAYRKVYEEPILRSRQPICTEE
ERVLGEERAAELSRLTGLFILRRTQEIINRYLPPRLDWTVFCSPSPLQRELYQALLSHRV
IRACLQGSTQTHTHLACITALKKLCNHPGLLYSTVQERSDGGSAEGSLYEGLRGVFPESY
SSGGFSTADSGKLLVLSDLLTTIHHLSPTDRVVLVSNYTQTLDLLQDLCVHLGYTYCRLD
GNTPTIQRQRLVDNFNSPHSAHFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAM
SRVWRDGQKKTVHIYRLLTAGTIEERIFQRQVSKQGLSGTVVDLGKGAEHTSFSSNELRD
LFSLTGTPCLTHDLLHCSCSMDGSAPEEGEDEAPASDRPCQLGRQGDRGGPGQKHLSMSE
LMQWRHFAGDTHTFRDAYLDHARTHISFAFQSTISHTTQ
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcgctcaggggcccccagccaggtctttggtaacatggcgaagaagccccggttc
gtccctcctggagcctcactggctggtcgtcctgatccccctgtgggtactctgcttgaa
ccggagcctctggcccctaaactctccccggtgaacgtgctctacaaggtccagcggagc
ctctcagcccctgcaccgccccttgccctgcctgtgaaggccttcagcctggctaagagc
agctcccaagccccaggcctgtccagagctctagccagggtgctaggtgcagcagacagt
aagaagaatgagctagagcctgaagacccttcctttacagaggagaacactggagaccca
gctgatttcagatgttcctcacagagtccggcaggatgctgtggtccagtcggggcaggg
tctggtagcggtgctggttctgacgggccgcggtacttcagtgtgatgtggtgtaaggcc
agtgggaggaaacacaaacgctggcagggagacgctgtcctggtgacacgagggcgcacc
gccacgcttaaagacatggagggcaaggacatcggcaagggtagtggctataaggtatca
gagctggcatcgctgggtgaaggagagaccttgatgataggagctaaacaggtggaggtg
atgggactcatatcagagctgaactacaataagggccgctgtttccttgacgtccatgtg
gagaaggaggagcctaagatatcagctcctcccccctcacaacgcccagcttccaaaccg
ttctgccgtccgacgctattgggcggagagactgataggggagtggccaagcctcaggag
gaggggccctgtaaaccacgccatgaccctctagcaccaggagccattgtcatgccccgg
ccctcaaccaatcaccagtggacgtataacaaggcaggcctcccactggtggacgtggtg
gttgacccctacttgacctctcacctccgaccccaccagcgagacggcctgctgttcctc
tacgagtgtgtcatggggatgagggctacatgtaggtacggtgctatcctggcagatgag
atgggtctgggtaagaccctccagagcgtggctttgacatggacgctgctaaagcagggc
ccatacggcgggaagccggttgctaagcttgtgctggtggttgcccctggcagcctggtg
cagaactggggggcggagtttaagaagtggcttggccgtgagaggatcaacgtctacact
gttaaccaggaccacagggtggagctgtttgcagcgtctcctctccacagtgtattagtg
atcagctatgagatgctgcttcgctctctggaagtggtacagaagctggagtttgggctg
gtgatctgtgatgagggtcacaggttgaagaacagcagcatcaagacttcctctgccctc
agcggtctcagctgtacacgcagagttattctgacaggtactcctgtccagaatgatctg
caggagttctatgccatcatagagtttgtgaacccgggaattctggggtcgtctgctgcc
tacaggaaggtgtacgaggagccaatcctccgctcccgacagcccatctgcactgaggag
gagagagttttgggggaggagcgagcggctgagctctctcgtctgactggtctgtttatt
ctgaggcggacccaagagatcatcaaccgctacctgccgcctcgtcttgattggacagtg
ttctgtagcccctcccccttgcagcgggagctgtaccaggctctcctctcgcaccgtgtc
atccgagcctgtctacaggggtcgacacagactcacacacacctcgcctgcatcaccgcc
ctgaaaaagctctgcaaccacccaggactgctctactccactgtacaggagcgttctgat
ggcggctcagcagagggttctctgtatgaagggctaagaggtgtctttccagagtcttac
tcatctgggggcttcagtacagctgactcagggaaactactggtcctgtctgacctactg
accactattcaccacctcagccctactgacagggtggtgctggtgtccaactacactcag
acgttagacctactccaggacctgtgtgtccacctgggctacacctactgtcgcctggac
ggcaacacccccaccatccagaggcagcgattggtggacaacttcaacagccctcactcc
gcccacttcctcttcctcctgagttctaaagccggaggggtggggcttaacctgatcggc
gcctcccacctggtcctatacgacatcgactggaaccctgccaacgatatacaggcaatg
tcacgagtgtggagagacggacagaagaagactgttcacatctaccgcctgctcactgca
ggtaccatagaggagcgtatcttccagaggcaggtgtccaaacaggggctttctgggaca
gtggtggacttggggaaaggggcagagcacaccagcttctcctccaatgagctgcgagat
ctcttcagcctgacgggcacaccctgtctcactcacgacctgctacactgcagctgcagt
atggacggatcagccccggaagaaggagaggatgaggcacctgcgtctgataggccgtgc
cagctgggtcgtcaaggtgaccgtggtgggccggggcagaagcatctgagcatgtcagag
ctgatgcagtggagacacttcgcaggggacacacacaccttcagagatgcttacctggac
catgcacgaacccacatctccttcgccttccagtccaccatctcacacaccactcagtaa
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