Oncorhynchus kisutch (coho salmon): 109883393
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Entry
109883393 CDS
T09179
Name
(RefSeq) polyadenylate-binding protein 1A isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109883393
09123 Folding, sorting and degradation
03018 RNA degradation
109883393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109883393
03041 Spliceosome [BR:
oki03041
]
109883393
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109883393
mRNA cycle factors
Stress granule specific factors
109883393
Spliceosome [BR:
oki03041
]
Complex C
Other components
Complex C specific factors
109883393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_occluded
YflT
Motif
Other DBs
NCBI-GeneID:
109883393
NCBI-ProteinID:
XP_031645036
Ensembl:
ENSOKIG00005008311
LinkDB
All DBs
Position
LG14:complement(89413896..89424181)
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AA seq
635 aa
AA seq
DB search
MNPGAPTYPMASLYVGDLHQDVTEALLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLREVFSKYAEYGSAMSICVMTDDSGKSRGFGFVS
FERHEDAQKAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLY
VKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI
VATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQAH
NRAAYYPANQIAQLRPSPRWATQGVRPQHFQNMPGSIRPSTPRQPSFSPMRPTNQMPRMM
STRSVGPQTMGPRAPSAPVSGAPVRGVPQYKYATGVRNPQNHINSQTQVTMQPPAVHVQG
QDPLTASMLAAAPPQEQKQMLGERLFPCIQNMHPSLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLQAHQAKELIQKTVPNSAGGPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccggtgctcctacttaccccatggcatccctgtatgtcggggatcttcatcaa
gatgtgaccgaagctttgctatacgaaaaattcagccccgccggggccatcctttccatc
cgggtctgcagggatatgatcacccgtcgttccctcgggtacgcctatgtcaacttccaa
cagccagctgatgctgagagggctctagacaccatgaactttgacgtgatcaagggtcgt
cctgtccgcatcatgtggtctcagcgtgacccatccctgaggaagagtggggtgggcaac
atcttcatcaagaacctagacaaatctattgacaacaaggccctctacgacaccttttct
gccttcggcaacatcctgtcctgcaaggtggtttgtgatgagaatggctcaaagggctat
ggctttgtgcattttgagacccaggaggctgctgaaagagccattgagaaaatgaacggc
atgcttctcaatgacagaaaagtgtttgtgggacgattcaaatctcgcaaagaacgtgag
gctgagcttggtgcccgggccaaagagttcaccaatgtttacatcaagaactttggtgaa
gatatggatgatgagaaactgagggaggtcttcagcaagtatgccgagtatggcagtgcc
atgagtatctgcgtcatgactgatgacagtggcaaatccagaggctttggctttgtgagc
ttcgagaggcacgaggacgcccaaaaggctgttgatgagatgaatgggaaggagctgaat
ggaaagctcatctacgtgggccgtgcccagaagaaagtggagcgtcagacggagctgaaa
cgcaagtttgaacagatgaaacaggatcgcatgacgcgctaccagggtgtcaatctctac
gtgaagaatcttgacgatggaattgatgacgagcgcctgcgtaaagaattctccccattc
ggcaccatcaccagtgccaaggtgatgatggagggtggtcgcagcaagggcttcggcttt
gtctgcttctcttccccggaggaggccaccaaggccgtgacagagatgaacgggcgcatc
gtggccacaaagcctctgtacgtggcgctggctcagaggaaagaagagcgccaggctcac
ctcaccaaccagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctc
aacccctaccagcctgcccctccttctgggtacttcatggctgccatcccacaggctcat
aacagagctgcttactaccctgccaaccagatagcccagctgagacccagccctcgctgg
gccacccagggtgtgagacctcaacacttccagaacatgccaggctccatacgtccttcc
acacccagacagcccagcttcagccctatgaggccaaccaaccagatgcctcgcatgatg
tccacgcgaagcgtgggcccccagaccatgggtccccgcgccccttcggccccagtgagt
ggagccccggtgcgtggcgtgcctcagtataagtacgccacaggagtccgcaacccacag
aaccatattaactcacagacccaagtcactatgcagccgcctgctgtccatgtgcagggc
caggaccctctgactgcctccatgctggccgctgcaccacctcaggaacagaagcagatg
ttgggtgagcgcttgttcccgtgcatccagaacatgcaccccagcctggctgggaagatc
actggcatgctgctggagatagacaactctgaactgcttcacatgctggagtctcccgag
tctctccgctctaaggtggatgaggctgtggctgtgctgcaggcccaccaggccaaggaa
ttaatccagaagactgtccccaactctgctggtgggccgagtgtctga
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