Oncorhynchus kisutch (coho salmon): 109883410
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Entry
109883410 CDS
T09179
Name
(RefSeq) ubiquitin conjugation factor E4 B-like isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04120
Ubiquitin mediated proteolysis
oki04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109883410
04120 Ubiquitin mediated proteolysis
109883410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109883410
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109883410
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
U-box type E3
109883410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
109883410
NCBI-ProteinID:
XP_031659497
Ensembl:
ENSOKIG00005029554
LinkDB
All DBs
Position
LG24:complement(491113..599244)
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AA seq
1322 aa
AA seq
DB search
MELSADEIRRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGATPQPFPPAASHALG
LNVQSVTSLMGASGVAYRSQSSEGVSSLSSSPSNSLETQSLSRSQSMDIDTASCEKSSIS
QVDVDSGIENMEVEDNDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDRDVI
FLPSLAAEFHQSSPKDVYSDFKDLIGQILMEVLMMSSMSHIHNPFASLTATSQPIAAAKS
PDRHLTLVQPSSQGGSPMATCASSFGASSLSSLYGYSPHPLAFNPSRMTSPSLPTSTHPM
VAPSPPTMANPSRLSLSAPLPVSQRYRPYSVTPPCGLFTPPCPTLASLPGFSSVPGPVPA
CFPVPPIALSQAPAPRLPTTPQSVLLPSSRPRPPSSMPLPLLPTSPRAAARQAARIPSSL
DVSAGGIDSQSCSDCFSIEACMETEMLNYLIERFDSVGMEESKAPKICSHPSVSQLLSNI
RSQCISHAALVLQGALTQPRSPLQQSLLVPYMLCRNLPYGFIQELARMTHQEEVFRQIFV
PILQGLGLAVKECSFDSDNFKFPLMALAELCEIKFGKTHPMCNLMTSLPLWCPKSLGPGM
GREVQRLSFLGAFFSLSVFAEDDTKVGDKYFSGPAITMENTRVGSQTLQHYLESARGDLF
KILHNILLNGETREVALNYMAALVNRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKI
KLEMVDPYYIFHPLCRLQVSREETRLKATMEELKTWLAEIHDPSKLYDPKFPTECFFLTL
HTHHLSILPGCRRYIRRLRAIRELNRTVEELKSSESQWKDSPLASRHREMLKRCKTQLKK
LVRSKACADAGLLDENLLRRCLQFYSMVIQLILRMVDPAYPHITLPLNPEIPKSFAALPE
FYIEDVAEFLLFVVQYSPQVLYEPCIQNIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTN
PAVQPRTQRFSEMMENYQLSVKHLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKS
LWQNMGHHGTFLEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWD
QLPREQQQSRQSQLTQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLN
FNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSREL
FEEVISKMKKAGIKSTITIEKFKLLSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMT
DPVILPSGNIMDRAIILRHLLNSPTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGR
FL
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagtgccgacgagatccgcaggaggagactggcaagactggcaggaggacaa
acatcccagcccagcactcccctgacgtccccacagagagagaccccccctgggcccctt
cctgggacctcaggggccacaccccagccctttccaccagctgcctcacatgcactggga
ctcaatgtccagagtgtcacctctcttatgggcgcctcaggtgtggcgtaccgcagtcag
agcagcgagggtgtgagctccctctccagctctccctctaacagcctggagacccagagt
ctgtccagatctcagagcatggacatcgacactgcctcctgtgaaaagagcagcatatcc
caagtggatgtggactcagggatagagaacatggaggtggaggacaatgaccgcagggag
aggaggaacctggctgaaaaggaatccgctgaaacctccgatgtctctgaagagcaggct
ctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaggacagagatgtcatc
tttctcccctcgcttgccgcagagttccaccagagcagccccaaagacgtctactctgac
ttcaaagacctgattggccagatcctgatggaggttctcatgatgtccagcatgtcgcac
atccacaatcccttcgccagcctgactgccacgtcccagcctattgccgctgccaaatct
cccgaccgccacctgacgctggttcagccctctagccagggcggcagtcccatggccacc
tgtgcaagctcatttggggccagctctctgtccagcctatacgggtatagtccacaccca
ctggcttttaacccatccaggatgacctctccatctctacccacctccacacatccaatg
gtagccccaagtccccctaccatggccaacccctctaggctctctctctccgcccccctg
cccgtctcccagcgctaccggccctactctgtcacccctccctgcgggctcttcaccccc
ccttgccccactctggccagcctccctgggttttcctccgtccctggacctgtccctgca
tgtttcccagtaccgcccatcgccctgtcccaggccccagccccaagactaccaaccacc
ccccagtcggttctccttccctcctccagacctcgcccacccagctccatgcccctccct
ctgctgcccacctcgcccagagcagctgcccgacaagctgcccggatcccgtctagtctg
gatgtgtctgcagggggaattgactcgcaatcctgcagcgactgcttctccatcgaggcg
tgcatggagactgagatgctcaactacctcattgagcgcttcgacagtgtcggcatggag
gaaagtaaggcgcccaagatttgcagccaccccagtgtcagtcagctcctcagcaacata
cgctcacagtgcatttcccacgccgctcttgtccttcagggtgccctcacgcagcccagg
agccccctgcagcagtccctgctggtgccctacatgctgtgccgaaacctgccgtatggc
tttatccaggagctggcccgcatgacccaccaggaggaggtcttcagacagatcttcgtt
ccaatccttcaagggcttggtctggctgtgaaagaatgttccttcgacagtgacaacttt
aaattccccctcatggctttagctgagctctgtgagataaagtttgggaagactcacccc
atgtgcaatttgatgacatctctgcccctgtggtgtcccaagtccctgggcccggggatg
ggccgagaggttcagagactgtccttcctgggagcattcttcagcctgtcggtctttgca
gaggatgacaccaaagtgggtgacaagtacttctcgggcccagccatcactatggagaac
actcgtgtgggtagccaaaccctgcagcactacctggagtcagcccggggtgacttgttt
aaaattctccacaacatcctactaaatggagagacaagagaggtagcgctcaactacatg
gcagctctggtcaaccgcaatgtgaagaaagcccagatgcagacagacgacaagctggtg
tccacagacggcttcatgattaacttcctgtcggtgctgcaacagctgagcatgaagatc
aagctggagatggtagacccgtactacattttccaccccctctgccgcctgcaggtcagc
cgtgaggagacccggctcaaggccaccatggaagagctcaagacctggctggccgagata
catgacccctccaagttgtatgatcccaagttccccacagagtgtttctttctgacgttg
cacacccaccacctgtccatcctaccaggctgccgacgctacatccgcaggctgagagcc
attcgcgagctcaacaggacggtggaagagctgaagagtagtgagagccagtggaaggac
tctccgctggccagccgacacagagagatgctaaagagatgcaaaacccagctcaagaaa
ctggtgcgctccaaagcctgtgccgatgcgggtcttctggacgagaacctgttacgcaga
tgtctgcagttttacagtatggtcattcagctcatcctacgcatggtggatcctgcctac
ccacacataactctacctctgaatcccgagatccccaaaagctttgctgctctgccagag
ttttacattgaagatgtggccgagttcctgctttttgttgtgcagtattcccctcaggtc
ctgtatgagccctgcatccagaacattgtcaccttcctggtggtgttcatctgcagtcag
aactacatccggaacccctacctgatcgccaagctggtggaggttctgtttgtcaccaac
ccagctgtgcagccgcgcacccagcgcttctctgagatgatggagaactaccaactgtcc
gtcaaacatttggtcccagccctcatgaagttctacactgacgtggagcacaccggtgcc
accagcgagttctatgacaagttcaccatccgctaccacatcagcaccatcttcaagagc
ctctggcagaacatgggccaccatggcactttcctggaagagttcaactccgggaaacag
tttgtgcgttacatcaacatgctgatcaacgacaccaccttcctgctggacgagagcctg
gagtccctgaagcgcatccatgaggtccaggaggagatgaagaacaaggagcagtgggat
cagcttcccagggagcagcagcagagccgccagtcccagctgacccaggatgagcgggtg
tcacgctcctacctggccctggctacagagacggtcgacatgttccacatcctcaccaag
caggtccagaagcccttcctccggcccgagttggggcctcgtctggcggccatgctgaac
tttaacctccagcagctatgcgggcccaagtgccgggacctgaaggtggagaacccagag
aagtacggttttgagcccaagaagctcctagaccagcttactgacatttacctgcaactt
gactgtgcccggttcgccaaggccatcgccgacgaccagcggtcatacagccgagagctc
tttgaggaagtgatttccaagatgaagaaagccggcatcaagtccaccatcaccattgaa
aaattcaagctgctatcggagaaggtggaggagatagtcgccaggaactcgcagtccgaa
atggactacagtgacgcacctgacgagtttaaagaccctctgatggacacattaatgact
gaccctgtgatactgccctctgggaacatcatggaccgagccatcatcctccgccacctt
ctcaactcccccactgacccctttaacagacagcctctcaacgaaagcatgctggagtca
ctccctgaactgaaggagaggatccaggcatggatgagagagaagcaaggccagggacgt
ttcctctag
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