Oncorhynchus kisutch (coho salmon): 109883572
Help
Entry
109883572 CDS
T09179
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109883572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109883572
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109883572
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109883572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Thc1_RRM
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
109883572
NCBI-ProteinID:
XP_031677406
Ensembl:
ENSOKIG00005031753
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCTFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNSNKGPGSIPEEHREY
IGRVVEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CVLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKSPKVV
TAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLTPPRAHIPSQSKLIQPFVNK
LFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGRQQVRESQGHSTQSWDEDGWVKPHYT
SPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTEGEAQRSHADGWSGYTHSHTHPDTG
SKKIRTDGVCVRTYAGVVDSKTSEGWLKTQSESDSSSMSPIQEEAGSEAGDDASDPAAGE
WQQPSTIQSKKSRKNNRMRKTDGAETTSTLFDVPQVW
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcagactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactgactaacgggttggacacgccagaggagcgctacatgaagctaaaaaagcac
tccatggacttcttgctgtttcaatttggactgtgtacgttcacatatgaccaggcagag
tccaagtacgtcatcaagacttttaatttttatatattcccaaagccgttcaacagaacc
tccccagacaccaagttcatctgccagagttccagcatagacttcctggccagtcagggt
tttgacttcaacaaagtgttccgtcacgggatcccgtacctgaaccaggaagaggaagtg
cagctgcgagagcagtatgaggagaggcggagtcagagtaacggatcaggaaacccctcc
tacatctcccccaactcaaacaaaggccccggtagcatccccgaggagcacagggagtac
atcgggcgggtggtagagaaggtggaatctctgttcactacctcagagaagactgtggac
ctggagccctgcactgggtttcagaggaagctgatctaccagactctcaactccaagttc
ccaaagggtcttcatgtggagaccttggagacagagaagaaagagcggtacatccagatc
agcaaggtggacgacgaggagaggaagaggagagaacggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctgga
aagttggtagttggccacaacatgctgctagacgtcatgcacaccatccatcagttctac
tgcgtactgccagaggacctgaatgactttaaagaagtcactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccactacgcaaccgttcaaggagttgatcaacatcacg
tctctagcagagctgcagaaacagctgaaagagagccccttcaaatctcctaaagttgtg
acggcggaggggttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgccttcatcactggtctctgcttcatctccatggccaactacctaggtactttcctg
actccccccagagcccacatcccatcccaatcgaaactcatccaacccttcgtcaacaaa
ctgttcctgatgaggatcatagatattccctacctcaacatcagtggaccagacctccag
cccaagagggatcatgttctgtacgttaccttccctaaggagtggaagaccagtgacctc
taccagctgttcagtgcctttggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtatctctgagtcagacggaccaggtacagatcgcgatgaacaccagtcgctatgcg
gagagctaccgtatccagacgtatgcagagtatgtccagggcaggcagcaggtcagggag
agccagggccattctacccagtcctgggacgaggacggctgggttaaaccgcactacacc
tccccctctacagttggtgctggtcctactggctacagctacggtcacaacaggccgtcg
ttggggaaacgctgcgtcagtccgatccaggaggagcagcctacggagggagaggctcag
agatcacacgctgacggatggagtggctacacgcactctcacacacaccccgacacgggc
agcaagaagatcaggaccgacggggtgtgtgtacggacgtatgcaggagtagtggacagt
aagacgtcagaaggctggctgaaaactcagtctgagtctgattcgtcgagcatgagtccg
atccaggaagaggcggggtcggaggcgggagacgacgctagtgatccggcggcgggcgaa
tggcaacagccttcaaccattcagagcaagaagagccgcaagaacaacaggatgaggaag
actgatggtgcagagacgacgtctactctgttcgacgtacctcaggtctggtag
DBGET
integrated database retrieval system