Oncorhynchus kisutch (coho salmon): 109883686
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Entry
109883686 CDS
T09179
Symbol
ddx6
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109883686 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109883686 (ddx6)
03036 Chromosome and associated proteins [BR:
oki03036
]
109883686 (ddx6)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109883686 (ddx6)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109883686 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
109883686 (ddx6)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109883686 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
109883686
NCBI-ProteinID:
XP_031651183
Ensembl:
ENSOKIG00005029977
LinkDB
All DBs
Position
LG18:complement(2910910..2937198)
Genome browser
AA seq
492 aa
AA seq
DB search
MSTASTQNPVILGHSNQNGQLRGPVVKPAGGQGSGGGSHQTQQPSHMKQASSTINNGTGP
SSTQLAKATPTANTVIKPGDDWKRNLTLPPKDTRMRTSDVTATKGNEFEDYCLKRELLMG
IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMGI
VPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIAXPGRILDLI
KKGVAKANQVQMMVLDEADKLLSQDFVVMMEEILSYLPKQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELL
AKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD
FPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIRPIPGCIDKSLYV
AEYHSENGEVKL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccagtacccagaacccagtgatactgggccattccaaccagaatggccag
ctccgaggcccggtggtgaagcctgcaggaggccagggcagcggaggaggcagtcatcag
acacagcagcccagccatatgaagcaggcctccagcacaatcaacaacggcactgggcct
agcagcacccagctggctaaagctacccccacagccaatactgtcatcaagcctggagat
gactggaagaggaatttgacgctccctccaaaagacacgaggatgagaacatcggacgta
acggcaactaaaggcaatgagtttgaagactactgcctgaagagggagctactgatgggc
atctttgagatgggctgggagaaaccctctccaatacaggaggagagcatccccatagcg
ttgtctgggagggacattctggccagggccaagaacgggacaggaaagagcggagcctac
ctcattcccttattggaacgcattgacctgaagaaggactgtatacaagctatgggcatc
gttcccaccagagaactggcattgcaggtgagccaaatctgtatccagatcagcaaacac
atgggaggggtcaaagtcatggccacaacgggtggcaccaacctccgcgatgacatcatg
aggctcgacgagacagtacacgttgtgattgccnaccctgggaggatcctggacctcatt
aagaagggtgtggccaaagccaatcaggttcagatgatggttttggatgaggcagacaag
ctgttgtcccaggactttgtcgtgatgatggaggagatattgagctacctgcccaaacag
agacagattctgctctactctgctaccttccctctcagcgtgcagaagttcatgaactcc
cacctgtccaagccctacgagatcaacctgatggaggagctgaccctgaagggggtcacc
cagtattatgcctacgttacagagagacagaaggtccactgtctcaacacgctcttctcc
aggctccagatcaaccagtctataatcttctgtaactcgtctcagagggtggagctgctg
gccaagaagatatctcagctgggctactcgtgtttctacattcatgccaagatgagacag
gagcatcgtaacagagtgttccacgacttcagaaacgggctctgccggaatctggtctgc
acagacctcttcacaagaggtatcgacattcaggctgtgaatgtggtgatcaactttgac
ttccccaagctgggcgagacgtacctgcaccgcatcggcagatctggtcgttttggtcac
ctgggtctggccatcaacctgatcacatacgatgaccgcttcaatctgaagggcattgag
gagcagctgggaacagagatcagacccatccccggctgcatagacaagagcctgtacgtc
gcagagtaccacagtgagaacggagaggtcaagctgtga
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