KEGG   Oncorhynchus kisutch (coho salmon): 109883790
Entry
109883790         CDS       T09179                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform X2
  KO
K12857  Prp8 binding protein
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109883790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oki03041]
    109883790
Spliceosome [BR:oki03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109883790
 Complex C
   U5 SnRNP specific factors
    109883790
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_2nd Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 109883790
NCBI-ProteinID: XP_020331411
Ensembl: ENSOKIG00005027686
UniProt: A0A8C7HXC8
LinkDB
Position
LG14:79989062..80005339
AA seq 348 aa
MIEPKKRPGDMAVVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgaaccaaagaagagaccgggggacatggcggtggttcctgccggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgttgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgacaggctc
atcttgatgtggaatgtttacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gacaagactgtgggagtgtgggacagtgagacgggtgagaggatcaagcgtctgaaaggc
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagcgacgatggaaccgtcaagctgtgggacatccgtaagaagggggcggtccatacg
ttccagaacacctaccaggtgttggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggggattctctgactggcctctgtctgagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaagattgcagcaggctcagctgacaggtttgtg
tatgtgtgggacaccacctctcgtaggatcctgtacaagctgccaggccacgctgggtcc
gtcaatgaggttgccttccatcccgaggagcctattgtcctctctggcgcaagtgacaag
agactctacatgggagagattcagtag

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