KEGG   Oncorhynchus kisutch (coho salmon): 109883872
Entry
109883872         CDS       T09179                                 
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109883872 (exosc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109883872 (exosc8)
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109883872 (exosc8)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 109883872
NCBI-ProteinID: XP_031664597
Ensembl: ENSOKIG00005048570
LinkDB
Position
LG29:39259215..39270768
AA seq 239 aa
PGSISTADGSALVKIGNTTVMCGIKGELTSPAVDAPNKGYIVPNVDLPPLCSSRFRPGPP
GEQAQAASQFIADVIESSAVVQKEDLCIVKGKLCWVLYCDIMCLDYDGNLLDACLIALLA
ALKNARLPEVTVNKETEVPEVTLENRRGLNIHKHPVGASFIVFDDSIMIVDPTAEEESLS
TATITVVTDEEERLCALHKPGGTSLSGEKLQDCISRATTRHREVRKLIDKVTQSDKTPK
NT seq 720 nt   +upstreamnt  +downstreamnt
ccaggttctatatccacagcagacggctcagccctggtgaagattggaaacaccacagtc
atgtgtggcatcaaaggggaactgacaagcccagcagtagatgcacctaataaaggctac
attgtacccaatgtagacctgccgcctctgtgttcgtctcggttccgtcctggacctcca
ggagaacaggctcaggccgccagccagttcatcgctgatgtcatagagagctctgccgtc
gtccagaaagaggacttatgcattgtgaaaggaaagctgtgttgggtcctgtactgtgac
atcatgtgtctggactatgacggcaacttgttggacgcctgtctcatcgccctgctggct
gctcttaagaacgcgcgtctcccagaggtgacagtcaacaaagagaccgaggttcctgag
gtgaccctggagaacaggagaggtctgaacatccacaaacaccctgtaggggcctctttc
attgtgtttgatgactctataatgattgtcgaccccaccgctgaggaagagagcctgtct
acggccactatcacagtggtaacggacgaggaagagcgactctgtgccctccacaagcca
ggtggtacgtcattatcaggtgagaagcttcaggattgtatcagccgagccacgacgaga
cacagggaggtccgcaaactcatcgacaaagtcacacagagtgacaagacaccgaaataa

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