Oncorhynchus kisutch (coho salmon): 109883886
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Entry
109883886 CDS
T09179
Name
(RefSeq) leucine-rich repeat protein soc-2 homolog
KO
K08127
epiphycan
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109883886
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
109883886
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRRNT
LRR_5
LRR_9
Motif
Other DBs
NCBI-GeneID:
109883886
NCBI-ProteinID:
XP_031653341
Ensembl:
ENSOKIG00005007016
LinkDB
All DBs
Position
LG19:1546244..1571134
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AA seq
575 aa
AA seq
DB search
MRMLEGLILGLFVLNAVVANPRFARQVELDTYDSANYDVDLENLNLENPDVDGYEDGLTI
DEPQIEIGTLAPPNYNYPGPGGPASLEEEEEEELPLRPQLIPQGSGGSGVLMGPDAQGEE
ELRLSPIDILHISGDFGGSTGSGGSGGSGVSGGSGGSGDLLASGSGDLLASGGSGGSMEI
GSAGSGDLGSGGSGDLGSGGSVGSGDLGSGDSVGSGDLGFGGSGGSGDLGSGGSGGSGDL
GSLGSGGSGTLLGSGGSGDILVSSTGGSGGSGDSGIIIISGEEELPLIPDTTLQEASGVS
GESGAFGTSGVSGPGGSDSGGSEVTLIPDPEEEEEVLLTTPKTPQESGGTVGSGGSGLPE
VDLDIKGMPTCLLCTCLGGSVYCDDVKLTSVPPLPKETTHFYARYNHITKINKGDFAQMN
KLKRIDLTANEIASIADDAFSGLPVLEELVLRENGVSQLPALPPVMTLIDASHNNIGATG
IHKEAFKDMTGLLYLYLTDNHIDHIPVPLPDSLRSLHLQRNNIQMIHEDTFCNLKDFNYI
RNALEDIRLDGNPINLSRTPQAYVCLPRIPIGAHI
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgttggaggggctcatactgggactcttcgtcctcaacgcagtggtggccaac
cccagatttgcccggcaggtggaattagacacgtacgacagcgccaactatgatgtggat
ctagaaaacttgaatttggagaatccggatgtcgatggttatgaagatggactgactatt
gacgaacctcagatagagattggcacactggccccaccaaattataactaccctggccct
gggggccctgcatcactggaggaggaagaggaggaggagttgcccctaagaccccagctc
atcccccaaggctcaggggggtctggggtactcatgggcccagacgcacagggagaggag
gagctgcgcctgagtcccattgacattcttcatatctccggggactttgggggttccacg
ggttctgggggttccggtggctctggggtttccggaggttctgggggttccggagacctt
ttggcttccggttctggggaccttttggcttctggaggctcagggggttccatggaaatt
ggatcagcaggttctggggatcttggttctgggggttccggggaccttggatccggaggc
tctgtgggttccggggaccttggatccggagactctgtggggtccggggaccttggtttt
ggaggctctgggggttctggggaccttggttctggaggctctgggggttccggggatctt
ggttccctgggctctggaggttccggcaccctcctaggctcagggggttccggggacata
ttggtttccagtactgggggttccggaggttccggggactcaggaataataattatatct
ggagaggaggagctgcccctcattcctgacactaccctccaggaggcatcgggtgtttct
ggggagtccggggcctttggcacctcaggggtctcagggcctgggggctccgactctggt
gggtcagaggtcacattaatccctgaccctgaagaagaggaggaagtgctcctgactact
ccgaaaacccctcaggagtctggaggtactgtaggctcagggggctctgggttgccagag
gttgacttggacattaaaggtatgcctacctgcctgctgtgcacctgtctgggtggttct
gtctactgtgatgatgtgaagctgacgagcgtgccgcctctccccaaagagaccactcac
ttctacgcccgctacaaccacatcaccaagatcaacaagggcgacttcgctcagatgaac
aagctgaagaggatcgacttgaccgccaacgagattgcatccatcgccgatgatgcgttc
tccggcctgcccgtgctggaggagctggtgctccgtgagaacggcgtgtcacagctgcct
gcccttccgcccgtgatgaccctcatcgacgccagccacaacaacattggcgccacaggc
atccacaaagaggctttcaaggacatgacgggtctgctgtacctgtacctaacagacaac
cacatcgaccacatccctgtgcccctaccggacagcctgcgctctctgcacctacagcgc
aacaacattcagatgatacacgaggacacgttctgcaacctgaaagacttcaactacatc
aggaacgcactggaggacattcgcctggacggcaaccccatcaacctcagcaggacccca
caggcctatgtgtgtctgccccgcatccccatcggagcccacatctaa
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