Oncorhynchus kisutch (coho salmon): 109883951
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Entry
109883951 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109883951
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oki01001
]
109883951
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109883951
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
109883951
Protein kinases [BR:
oki01001
]
Serine/threonine kinases: Other
PIKK family [OT]
109883951
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109883951
mRNA cycle factors
Common to processing body (P body) and stress granule
109883951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
FATC
FAT
HEAT
HEAT_ATR
Motif
Other DBs
NCBI-GeneID:
109883951
NCBI-ProteinID:
XP_031677647
Ensembl:
ENSOKIG00005029564
LinkDB
All DBs
Position
Unknown
AA seq
2524 aa
AA seq
DB search
DGRKTVLLKSNXCSSEVLNLLANKACQCYVALGDWSSVQEWQASVHALKKNPGNPAAASV
HLKTDFNYVRALSCFEDGDFPECRAQLELLAGRDDYGLLNSTSTGSKDKLDLKRLLPAVL
SPDPSELQKAIEVQLLRSAVAAMTTANHEHEQKAMPTSETLIRYLKQTGRISLGPLRLST
LTLSDGLPTLATLQLYCCSALENTLSGQEDCLIPLYSEALSTCKQQDVQPWLHALRYTIY
QRQLLLRLKGSSAPLDGHLMELCLTAVKFARKQGNIALATRLLGQCSEEEEEEEEGLSRA
FRRLSLAGAVGEKWGPELQIEKAKVLCTAGQSLAAMEMLSSCALSFCRSGKCERAACRSV
LTLCKWLLADWKDMTPQLKQVVKRSGVMTPGVAALPPISRNITALLELPLEDQGMPRITA
ETTVSVGVGEPDLVLGQLYQLSTSQAPEVAKSWAALASWAYRWGRKVVDNASQGEGVPLL
PGEKKEIEELLPECTSEEDKENIFSILGQAMCRPAGIQDEDMALQQEDEEEDDMVDVIWR
QLLSACPWLEEQGEVEGVQGGGSGVMEGLIRVWRRVVDRIFSLYRVSCGAYFTFLKLNAG
QVPIDEDDPKLLLTNQNSKQSNDDIIVMATLRLLRLLVKHAGELREGLELGLASTPTAPW
RGIIPQLFSRLNHPEAYIRQSICSLLCRVAQDSPHLILYPAIVGSLSLGGEAQHAGNKLP
SALPTFLGSMQGEGLCEEGEGTLGSNPASQEEDGRGEEFPALCSSQDQAMMHDCYSKIVD
KLSAANPTMVLQVQMLVGELRRVTLLWDELWLGVLQQQHMHVLRRIQQLEDEVKRVQNNN
TLRKEEKVAIMCEKHSALMRPVVFALDHVRSITTTPAETPHETWFQQTYGDAITSALERL
KSPHNPANPASSWVPFKQIMLSLQQRAQKRTSYLLRLDHISPRLAAMATTEMALPGEVSA
TDALTIQSVGNTITILPTKTKPKKLHFLGSDGRNYPYLFKGLEDLHLDERIMQFLSIVNT
MFTKVNQQERPHFHARHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKAQD
SFQQQPQPLPLVPRPSELYYSKIGPALKGVGLSLDVSRRDWPLSVMRDVLKELMASTPPN
LLAKELWCSCTTSSEWWRVTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHID
YNVCFEKGKSLRVPEKVPFRMTHNIETALGVTGVEGIFRLSCEQVVQMMRRGRETLLTLL
EAFVYDPLVDWTAGGEVGFAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNW
FKNREEMLGVLPQVEGAVDEYLTLQKLLSQGEKMTTKILEEMSFLEGAESCSDHLILTLE
HRYSEHTQLASRQRTVQELIQGKQGDLDQWMSQYQAAFSSLEATQLASLLQDISSHIDLG
PPSYVPATAFLQNAGQAHLISQCEGLEAELGSLLQQRRGALRGCLEQLHSYATVALLYPR
AVLLRHRAHLWKQWLEELLCDMTVDHCQQISRQYEVQFAPQPPLASCQFLPAFELALQHQ
ASETNTRVLLQAERVKAEGATVHACEEQLQEIERCISVFLLENPEQGSLSLAAIISSALC
TLTRRNLVMEGAAAAAGGQLVELTSRDGAWFLEELCSMSGNITSLVQLLGQCQLLPHDLD
LPSPQETAQTVYLANAVYTCLQELNTNFRQIIFPEALRCMLKGEATLETMLSELDLLVEQ
CADGVSLQGLADALHTHLRSAAMGLEHEADTQCLHITRMLRAQYCQLMQPPGASMDAVGQ
DSPKMSAGQMLLVAFDGMFAQLETAFGQLTEKMISMEVPPAWRKVDVMREARAAQVHFFH
SGPHRHVLEEIFFLKRLQTIREFFRLCGSFAQTLSGTCPPVSEDPPPSNGPVVGLGGVGL
PGKPLFRGAAAAVVVSEEQMTRPIKAFTAEFVRQMLIGLPTQTLGLSLCSTLSALGLDLT
AQVEAKDFGADGKVSLDELCKQTVVQGLGAGRMSQLLLNRGTVLASSYDTAWKKLDLLRR
LETSLDAAKVSLQRTQLHITMFQWQHEDVLGPRTQPMSVSPPPRSIILSSMKKKLYKLSQ
DEAAIAAVQEKLASLEGSIEQRLKWAGGANPALAPVLQDFDLTIAERRALVARESQRTSQ
VTFLCSTILNFEGLRMRTPEALSMDSALFELLKRCQQTCSYAAQFNTSVSSIELQLLHRL
SPALELPIGSPDWLACAQKQLDQELATQGAVQEEREQQLDVATESLQLLVDSIKGILSNH
NRQLADVKHLLRAMAKDEENALAEGEEVTYEGSVRQFLLEYKAWQDNVQIVLFTVVQATG
QPRGGGASQEGVELLQEIPATLKELHTQSTSVYNGLVGFASPLVTERGGDCSSPTSTAQT
SFAAAVRCSGVKTQTDSMSQNSRKLLPRNLGTPADTPPSAQTMTTKGLNPSPKRAVRDPK
TGRAVQERNSYAVSVWKRVKAKLEGRDVDPSRRMSVTEQVDCVIKEATNVDNLSQLYEGW
TAWV
NT seq
7577 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcaggaagacggttctcctcaagtccaacnngtgttcctccgaggtgctcaacc
tccttgccaataaggcatgccagtgctatgtggccctcggcgattggtcctcggtgcagg
agtggcaggccagcgtgcacgccctcaagaagaaccctggtaaccctgccgcagcgagcg
tgcacctgaagacagacttcaactacgtacgggcactgagctgcttcgaggacggagact
tcccagaatgccgtgctcagctggagctcctggcggggagagacgactacggcctgctca
actccacctctactggctccaaggacaaactagacttgaagcgtctcctcccggcagtgt
tgagtccggacccctcagaactacagaaggccattgaggtgcagctgctgcggagcgctg
tggctgccatgacaacggccaatcacgagcatgaacagaaggccatgcccacctcggaaa
ccctgatccgttacctgaagcagacgggtcgtatctctctgggtcccctccgcctttcca
ccctcaccctctctgacggcctgcccactctggccaccctgcagctatactgttgctctg
ccctggagaacacactgagcggacaggaggactgtctgatccccctgtacagtgaagctc
tcagcacctgtaaacaacaggacgtccagccgtggctccacgcactgagatacaccatct
accagagacagctactgctcaggctgaaaggctcctctgctccactggatggccacctga
tggaactatgtctgacggccgtcaagttcgcccggaaacaggggaacatcgccctggcaa
cgcgtctgctgggccagtgcagcgaggaagaggaagaggaggaggaggggttgagccgtg
cattcaggcgtctgtcactagcgggtgctgtgggggagaagtggggacctgaactacaga
tcgagaaggctaaagtcctctgcaccgcgggtcagtccctggcagccatggagatgttga
gttcctgtgctctgtctttctgtcgctcagggaaatgtgagcgagccgcctgtcgctccg
tcctcactctgtgtaagtggctgctggcggactggaaggacatgacccctcagctcaaac
aggtggtgaagaggtcaggggtcatgaccccaggggtcgccgctttgccccccatcagcc
ggaacatcacagccctgctggagctacccctagaggaccagggcatgccccgaatcacag
ctgagaccacagtgagtgtgggtgttggagaaccagacttggtcctggggcagctctacc
agttgtccaccagtcaggctccggaggtggccaagtcctgggcggctctcgccagctggg
cctatcgttggggacggaaggtggtcgacaacgccagtcaaggtgaaggtgtgcccttgc
tcccgggagagaagaaggagatcgaggagcttctcccagaatgcaccagtgaggaggaca
aggagaacatcttcagcatcctgggtcaggccatgtgtcgacctgctggaatacaggatg
aggacatggccctgcagcaggaggatgaggaggaggatgacatggtggatgtgatctgga
gacagctgctgtctgcctgtccctggctggaggagcagggggaggtggagggggtccagg
gtgggggtagtggggtgatggagggtctgatccgggtctggaggagggtggtggacagga
tcttcagtctctacagggtctcctgcggtgcctacttcaccttcctcaaactcaacgctg
gacaggttcccatcgatgaggatgaccccaagctgctgctgaccaatcagaacagcaagc
agagtaacgacgatatcatcgtcatggcgacgctgcggttgctacggctgctggtgaagc
acgccggggagctgagggaggggcttgagcttgggctcgcctcaacccccaccgccccct
ggagaggcatcatcccccagctgttctctcgtctgaaccatccagaggcttacatcagac
agagtatctgtagtctgctgtgtcgcgttgcccaggactcaccacacctcatcctgtacc
ctgctatagtcggatcactgtctctgggaggagaggcccagcatgcaggaaacaagctcc
cgtcggccctgcccaccttcctgggcagcatgcagggggaggggctgtgtgaggaagggg
aggggacactgggcagtaaccccgcctcccaggaggaagatgggcggggtgaggagtttc
ctgcgctgtgttccagccaggaccaggccatgatgcatgactgctacagcaagatagtgg
acaagctgtctgcagccaaccccactatggtgttacaggtccagatgctagttggagagc
tgcggcgcgtgaccctgctgtgggatgagctgtggctgggcgtcctgcagcagcaacaca
tgcacgtcctgcgcaggattcagcagctggaggacgaggtcaagagagtgcagaacaaca
acacactacgcaaggaggagaaggtggccatcatgtgtgagaagcactccgctctgatgc
gtcccgtggtgttcgctctggaccacgtgaggagcatcaccacgacgcccgccgagaccc
cccacgagacctggttccagcagacctacggggacgccatcacctcggccctggagagac
tgaagagccctcacaacccggccaacccggccagcagctgggtcccgttcaaacagatca
tgctgagtctccagcagagggctcagaagaggaccagctatctgctgcgtctggaccaca
tcagcccccgcctggctgccatggcgaccactgagatggcgttgccgggcgaggtgtcgg
caacggacgcgttgaccatccaaagtgttggtaacaccatcaccatcctgccgaccaaaa
ccaagcccaagaaactacacttcctgggctccgacggacgcaactacccttacctcttca
aaggtctggaggacctccacctagatgagcgaatcatgcagttcctttctatagtcaaca
ccatgttcaccaaggtgaaccagcaggagcgccctcacttccacgcccgccactactccg
tcaccccgctggggacgcgctcaggactcatccaatgggtggacggcgccacgccgctgt
tcggcctctacaagcgctggcagcagagagaggccgtgctgcaggctcagaaggcccagg
attcgttccagcagcagccccagcccctccctctggttccacgacccagtgagctctact
acagcaagataggccccgccctgaagggggtggggctcagcctggatgtttcgcggcggg
attggccgctcagcgtgatgagggatgtgcttaaggagctgatggcgtccacgcccccta
acctgctggccaaagagctgtggtgctcctgtaccacgtctagcgagtggtggagggtca
cacagtcctacgccaggtccactgctgtgatgtctatggtaggctacatcattggcctcg
gcgaccgtcaccttgacaacgtgctgattgacatgacgacgggagaggtggtacacatcg
actacaacgtctgcttcgagaaagggaagagcctgcgtgtgccagagaaagtgccgttcc
gtatgacccacaacatagagacggccctgggagtcactggggtggagggcatcttcagac
tgtcctgtgaacaggtggtccagatgatgcgtcgtgggcgggagacgctgctgaccctgc
tggaggcgtttgtgtacgaccctctggtggactggacggccgggggggaggtgggcttcg
ccggggccgtgtacggagggggggggcagcaggcggagaacaagcagagcaagagggaga
tggagagagacatcacacgctccctcttctcctcccgcgtggctgagatcaaggtgaact
ggtttaagaaccgtgaggagatgttgggggtcctgccccaggtggagggggcagtggacg
agtacctcaccctgcagaagctgctctctcagggggaaaagatgaccaccaagatcctgg
aggagatgagcttcctggagggggctgagagctgctcagaccacctcatactcaccctgg
aacacaggtactctgagcacacccagctagcatctcgtcagcgtacggtccaggagttga
tccaggggaagcagggtgacctggaccagtggatgtcccagtaccaagcagccttcagca
gcctggaggccacacagctggccagtctactgcaggacatcagcagtcacatagacctgg
gtcctcccagctacgtcccggccacagccttcctgcagaacgcaggccaggcccacctaa
tcagccagtgcgagggcctggaggctgagttgggctccctgctgcagcagcgccgtgggg
ccctgcgaggctgtctggagcagctgcacagctatgccactgtggccctgctgtacccgc
gggccgtgctgctgcgccacagggcccacctctggaaacagtggctggaagagctgctct
gtgacatgactgttgaccactgccagcagatctccagacagtatgaggtccagtttgccc
cccagcctccccttgcgtcgtgccagttcctgccagcgtttgagctggccctgcagcacc
aggcgtcagagaccaacacgcgtgtcctgctccaggcggagcgtgtcaaggccgagggag
ccacggtccacgcgtgtgaagaacagctgcaggagattgagcgttgcatcagtgtgttcc
tcctagagaacccagagcagggctctctcagcctggccgccatcatctcatcagccctct
gcaccctcaccaggcgtaacctggtgatggaaggggcggcggcggcggcaggggggcagc
tggtagagttgacgtctcgtgacggggcctggttcctggaggagctgtgttccatgagcg
gtaatatcacctcattggtccagctgctggggcagtgtcagctcctcccacacgacctgg
acctgccctcgccgcaggagaccgcccagaccgtctacctggccaacgccgtctacacct
gtctacaggagctgaacactaacttccgtcagatcatcttcccggaggctctacgctgca
tgttgaagggcgaggccaccctggagaccatgctgtcggagctggaccttttagtggagc
agtgtgcagacggggtctccctgcaggggctggccgacgccctgcacacacacctccgca
gcgccgccatgggcctggagcacgaggcggacacacagtgtctccacatcaccaggatgt
tgcgggcccagtactgccagctgatgcagcctccaggggccagtatggatgccgtgggac
aggactctcctaagatgtccgccggtcagatgctgctggtggccttcgatggcatgtttg
ctcagctagagaccgccttcgggcagctcacagagaagatgatttccatggaggtaccgc
cggcgtggaggaaggtggatgtgatgcgtgaggcgcgggcggcccaggtccatttcttcc
acagcggtcctcacagacatgttctggaggagatcttcttcctcaagagactccaaacca
tcagggagtttttcaggctctgtggatccttcgctcagacactctctggtacgtgccccc
cagtgtctgaggaccctcctccctccaacggcccagtagtgggtctggggggtgtaggtc
taccagggaagcccctgttccggggggcggcggcggcggtggtagtgagcgaggagcaga
tgacccggcccatcaaggcgttcacagcagagtttgtccgtcagatgctgattggtcttc
ccacccagaccctgggtctgtctctctgcagcactctgtctgccctgggtctggatctta
ccgcgcaggtggaggccaaggactttggagccgacggcaaggtgtcgctggatgagttgt
gtaagcaaacagtggtgcagggtctgggcgcaggccgtatgtctcagctgctactgaaca
gaggcacggtgctggcgtcctcctacgacacggcctggaagaaactggacctgctcagac
gcctggagaccagcctggacgctgccaaggtctccctgcaacgcacccagctacacatca
ccatgttccagtggcagcatgaggacgtgctcggacctaggacccagccgatgagtgtga
gtcctcctcctcgctccatcatcctcagtagtatgaagaagaagctttacaaactcagcc
aggatgaggcggccatcgctgctgtacaggagaagctggcatcactagagggcagtatag
agcagcgtctgaagtgggccggaggggccaaccctgccctggccccggtgctccaggact
ttgatctgaccatcgcagagcgccgcgccctcgtggcccgggagagccagcgtaccagcc
aggtgacgttcctgtgtagtaccatactgaactttgagggcctgcggatgcggacccctg
aggccctgagcatggactctgctctgtttgagctgctgaagaggtgccagcagacctgct
cctacgctgcccagttcaacacctccgtctcctccatagagctacagctgctgcacagac
tgagcccggcgttggagctgcccatcggcagccctgattggctagcttgtgcccagaagc
agctggaccaggagctggctacccagggtgctgtgcaagaggagcgtgagcagcagctgg
atgtcgccacggaatcactgcagctattggtggacagcatcaagggcatcctgtccaatc
acaaccgccagctggctgatgtcaaacaccttctgagggccatggccaaggacgaggaga
acgcgctggcggagggtgaggaagtgacctacgagggcagcgtgcgccagttcctgttgg
agtacaaggcgtggcaggacaacgtgcagatcgtgctgttcactgttgtccaggcaacgg
gccagccccgaggcggaggagccagtcaggagggggtggagctactgcaggagatacctg
ctaccctgaaggagctacacacacagagcaccagtgtgtataacggcctggttggctttg
cgtctccgttggtgacagagaggggtggagactgttccagccccacctctacagctcaga
ccagcttcgctgcagcggtgaggtgcagcggtgtgaagactcagacagactcaatgtccc
agaattcacgcaagctcctcccccgtaaccttggcaccccggcggacaccccccccagcg
ctcagacgatgaccaccaagggtctaaatcccagccccaaacgggctgtacgcgacccca
agacgggacgagctgtccaggagaggaactcgtacgcggtgagcgtgtggaagagggtga
aagccaagctggaggggagagacgtggaccccagcaggaggatgagtgtcactgagcagg
tggactgtgtgataaaggaggccaccaatgtggacaacctgtcccagctgtacgagggct
ggacagcctgggtgtga
DBGET
integrated database retrieval system
