Oncorhynchus kisutch (coho salmon): 109884067
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Entry
109884067 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109884067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109884067
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109884067
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109884067
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109884067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
109884067
NCBI-ProteinID:
XP_031685471
Ensembl:
ENSOKIG00005035662
LinkDB
All DBs
Position
LG8:7751412..7791824
Genome browser
AA seq
550 aa
AA seq
DB search
MPKEKYDSPDPRRLYTIMSAEEAANGKKSHWAELEISGRVRSLSSSLWTLTHLTALHIND
NNLSRIPPDIAKLPHLAYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQPWGXKGNPLSQDILNLYQESDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDPMIP
TAMFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITHCDADIISLQEVETEQ
YHALFLETLKDHGYEGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDMFSGGMKPLQETQFLLVANAHMHWDPEF
CDVKLIQTMMFLSELKSITERALSSVATGSPTSDPSSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFRELRYNEALSNFSCQGKNGPSDGSITHSFQLKSAYQGSLMSYTNYTYDFK
GVIDYIFFSKTHMSVAGLLGPLESQWLTDNNITGCPHPHIPSDHFSLLAQLELHPPVTTS
LNGLHLPVHR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgattccccggatcctcgccgattatacaccatcatgtcagct
gaggaggcagccaacgggaagaagtcgcactgggccgagctggagatatcaggtcgggtc
agaagtctgagcagttctctgtggactctcacccacctgacggctctacacatcaacgac
aacaacctgagtcgcatcccgcccgacatcgccaagctgccacacctggcctacctgaac
ctgtcgtccaacaagctccgcagcttgcccgccgaactcggaaacatggtgtctctcagg
gagttgcttttaaacaacaatcttttgcgagttctaccttacgaactcgggcggctgttc
cagttacaaccctggggctaaaagggtaaccctttgtcccaagacatcctcaacctgtac
caggaatcagacggaaccagaaagctcttgaactacatgcttgacaatctagcagtgcac
ccagaacagctcccccagagaccttggatcaccttgaaggagcgggacccaatgatccct
acagccatgttcacagtgatgtgttacaacgtgctgtgtgataagtacgccactcgtcag
ctgtacggctactgtccctcctgggccctcaactgggagtacaggaagaagggcatcatg
gaggagatcacacactgtgacgctgacatcatcagtctacaggaggtggagacggagcag
taccacgccctcttcctggagactctaaaggaccatgggtacgaggggtacttctgccca
aagtctcgtgccaaactggtctcagaacaggagaggaagcacgtggacggatgtgctgtg
ttcttcaagactgagaaatttactctggtgcagaaacacacggtggagttcaaccaggtt
gccatggcaaactctgagggttcagaggtcatgttgaacagggtcatgaccaaggacaac
atcggggtcgctgtcctactggaggtcaacaaggacatgttctctggtggcatgaagcct
ctgcaggagacacagttccttctggtggctaacgcccacatgcactgggacccagagttc
tgtgacgtcaagctgattcagaccatgatgttcctgtctgagctgaagagcatcaccgag
agggcgctgagctccgtggcaacaggctccccgacctccgacccctcctccatccctatc
gtcctctgtgctgacctcaactccctgccagactctggtgtagtggagtacctgagtaac
ggtggcgtagcagagaaccataaggacttcagagagctgcgctacaacgaggctctcagc
aacttcagctgccagggaaagaacggaccttctgacggcagcatcactcacagcttccag
ctgaagagcgcctaccagggcagcctcatgtcttataccaactatacgtatgactttaag
ggcgtgatcgactacatcttcttctccaagactcacatgtctgtagccggcttgctcggt
cccctggagtctcagtggttaacggacaacaacatcaccggctgtccccacccccacatc
ccctctgaccacttctctctgctcgcccagctggagctccacccgcccgtcaccacctcc
ctcaacggcctgcacctgcccgtccacaggtag
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