Oncorhynchus kisutch (coho salmon): 109884314
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Entry
109884314 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oki01009
]
109884314
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109884314
04131 Membrane trafficking [BR:
oki04131
]
109884314
03036 Chromosome and associated proteins [BR:
oki03036
]
109884314
Enzymes [BR:
oki01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
109884314
Protein phosphatases and associated proteins [BR:
oki01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109884314
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
109884314
Membrane trafficking [BR:
oki04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
109884314
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
109884314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Med13_C
Motif
Other DBs
NCBI-GeneID:
109884314
NCBI-ProteinID:
XP_031650721
LinkDB
All DBs
Position
LG17:complement(85408137..85449404)
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AA seq
1142 aa
AA seq
DB search
MESVPEPRSVRRSPRTSNSPDYNAAKKESGKTRKKTSNLQETRRRGRMDRSKGEEDIANQ
LDNLDLRNEASATGTGLVFDSVFTHHRCLWDPSHPECPERVSTVMDTVEKQGLLSRCVTV
EARAASNEELHLVHTKEYVDLMRSTQRMDEDQLKTLADSYDSVYIHPESYTCASLAVGSV
LQLVDKVMTSELRNGFSVARPPGHHAQVDQMNGYCMFNNLAIAARYAQTRHRVERVLIVD
WDVHHGQGIQYIFQEDPSVLYFSVHRYEEGLFWPHLPESDSSAVGTGSGEGYNINLPWNK
IGMKDADYVAAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMSASPQCFSVLTHMLL
GLAQGKLLLVLEGGYNLQSTAEGVCACLRSLLGESCPRLGSPSIPSDSALKSISRSISAL
YPYWTSLQVLEGGSLSDSDPLNPALTPAESSMELGEELCEERGDSLDLTTGLVYDQRMME
HHNMWDSHHPELPQRIQRIFSRHDDLGLVSRCLRIPARLALEEELALCHSLEHIANIKAT
EGMKTRDLHRLGDEYNSIFISTESYRSARLAAGACFNAVQAVLTGQVRNGVAIVRPPGHH
AEKDAACGFCFFNTAALTARYAQSISQKPLRVLILDWDVHHGNGTQHIFEEDDSVLYISL
HRYEDGTFFPTSEDAHYNRVGEGKGAGFNVNIPWNGAKMGDAEYLAAFHSVVMPIAREFD
PGLVLVSAGFDAARGDPLGGYQVTPPGYAHLTHLLMGLAGGRVLVILEGGYNLTAISESM
SACTSILLGDPALPLPPLPPTSPNAAVSINKVIRTHSAYWLSLRIQLPDTLRLSLPNPKP
RGKRTSKGKKSPRQGNQGWASPGQGSPQTTPQTTPQTTSQTTPQTTPQTTPQTTPQTTPQ
TTPQTTPQTTSQTTPLPSGDRGDLDLDDLTKGLVSLDLNQSTSANPSPASVPVGGARSKV
RLSPMKSPVVKVKTEAVPNKPEILQPTPDETETPAVAMVASDPVTKGDQERGAVEVEGAS
GCSKEPVFELFCGNQDVDGSTMYVVDPLSWCPHLDSVRPVPVGGIDVFRPCEDCGTDTEN
WICLCCYKVYCGRYVNQHMLTHGVSSEHRLVLSFADLSVWCYSCQAYVHNQMVLKPRTLP
TV
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgtgccagagcccaggtctgtcagacgttcccctcgcacgtcaaattcgccg
gactacaacgcagccaaaaaggagagtggcaagacccggaagaagacgagcaacctgcag
gagactcggaggagaggaagaatggacagaagtaaaggagaagaggacatagccaatcaa
ctggacaacctggatctacgtaacgaggcttcagccacagggactgggctggtgtttgac
agcgtgttcacacaccatcgctgtctctgggatcccagccacccagaatgcccagagaga
gtgagcactgtaatggacacggtggagaaacagggactgctgtctcgctgtgttacagtg
gaggcgagggctgcgtctaacgaagagctgcacttagttcacacgaaggagtatgtagat
ctgatgaggtccactcagcgtatggacgaagaccagctgaagacgctggctgactcctat
gactcggtctacatccaccctgagtcatatacgtgtgccagtctggctgtgggctctgtt
ctgcagctggttgataaggtcatgacctcagagctccggaatggattctctgttgctaga
cctccaggccaccacgcccaggtcgaccagatgaatggctactgtatgtttaataatctg
gccatcgcagcgcgatacgcacagacacgccatcgagtggaacgagttctgatagtggac
tgggatgtgcatcacggccaggggatccagtacattttccaggaggatcccagcgttctg
tacttctcagtccacagatatgaggagggtttgttctggccccatctgcccgagtcagac
agcagtgctgtgggcaccggttctggggagggatacaacatcaacctgccctggaataag
attggaatgaaagatgcagactacgttgccgcattccagcagcttcttttgcctgtagcc
tatgagttccagcctcagcttgtcctggtggcagcaggcttcgactctgtgataggtgat
cccaagggagagatgtctgccagtcctcagtgtttctctgttctgactcacatgctgctg
ggcctggctcaggggaagttgttgctggttcttgagggaggatataaccttcagtccaca
gcagaaggggtgtgtgcctgtctgaggtcactattgggggagtcctgcccacgcttgggg
tcaccatccatcccgagtgacagtgccctgaaatctatctccaggtctatctctgctctg
tacccttactggaccagtctgcaggtactggagggagggtctctatcagacagcgacccc
ctgaacccagccctgaccccagcagagagcagtatggagttaggtgaagagctctgtgag
gagagaggagacagcctggacctgaccacgggcctggtgtacgaccagaggatgatggaa
catcacaacatgtgggacagccaccacccagagcttccccagaggatccagcgtatcttc
tcccgtcacgacgatctgggcttggtgtcccgttgcctgaggataccggctcgacttgcc
ttggaggaggagctggctctgtgccacagcttggagcacatagccaatatcaaggccaca
gagggaatgaagacgagggaccttcacagactgggagatgagtacaactctatcttcatc
agtactgagagctacaggagcgcccggttggccgctggggcctgctttaatgcagtacag
gctgttctgacgggacaggtccgtaatggcgtggccatcgtgcgcccccctggtcaccat
gccgaaaaggacgctgcctgtgggttctgtttcttcaacaccgccgccctgactgcccga
tacgcccagtccatctcccagaagcccctgcgggtcctcattctggactgggatgttcac
catggcaacggaacacagcacatcttcgaagaggatgacagtgtcctctacatctccctg
catcgctacgaggatgggaccttcttccctacttccgaggacgctcactacaacagagtg
ggcgaggggaagggagcagggttcaacgtcaacatcccctggaacggagccaagatgggc
gacgcggagtaccttgcagccttccactcagtggtcatgcccatcgctagagagtttgac
ccgggcctggttctggtatcggcagggtttgatgcagccagaggggaccctctaggaggg
taccaagtgacccccccgggctatgcccaccttacccacctcctgatgggcctggcagga
ggcagagtattggtcatcctggagggtggttataacctgactgccatttcggagtctatg
tctgcctgcaccagcattctcctgggagaccccgctctgcccctgcctcccttgcccccc
acctcacccaacgcagcagtcagcatcaacaaggtcatacgcacccactccgcctattgg
ctgtccctcaggatacaacttccagatactctccgtctgtctctgccaaaccccaaaccc
cgagggaagaggacttctaagggcaagaagtctcccagacagggtaaccagggctgggca
agccctggtcaggggtcaccccagaccacacctcagaccacacctcagaccacatctcag
accacacctcagaccacacctcagaccacacctcagaccacacctcagaccacacctcag
accacacctcagaccacacctcagaccacatctcagaccacacctctgccctctggtgat
cggggcgaccttgacctagatgacctcacaaagggactggtgtcactcgacctaaaccaa
agtacctcagccaatcccagcccagcgtctgtccctgtgggtggagccaggtcgaaggtg
aggctcagtcctatgaagagccctgttgttaaggtgaagacggaagctgttccaaataag
ccagagattctccaaccaacgcctgacgagacagagacgccggcggtcgccatggttgcc
tcagacccagttaccaagggagaccaggagagaggtgcggtggaggtggaaggggcgtct
ggttgctccaaggagccggtgtttgagctgttctgtggaaaccaggatgtggacgggagc
accatgtacgtggtggatcccctgtcctggtgcccccacctagactcagtgaggcctgtt
cctgttggaggtatagatgtgtttcggccctgtgaggactgtggaaccgacactgagaac
tggatctgtctctgctgctacaaggtgtactgtggtcgctatgtcaaccagcacatgtta
acccacggcgtgtcgtcagaacaccggctggtgctgagcttcgctgacctgtcggtctgg
tgttactcctgtcaggcctacgtccacaaccagatggtgttgaagccaagaacgctgccc
actgtatga
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