Oncorhynchus kisutch (coho salmon): 109885015
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Entry
109885015 CDS
T09179
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109885015 (ddx1)
03016 Transfer RNA biogenesis [BR:
oki03016
]
109885015 (ddx1)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109885015 (ddx1)
Spliceosome [BR:
oki03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109885015 (ddx1)
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109885015 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109885015
NCBI-ProteinID:
XP_031656565
Ensembl:
ENSOKIG00005043366
LinkDB
All DBs
Position
LG21:complement(45410157..45453014)
Genome browser
AA seq
741 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRTAVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAITKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTMGCYLDLDNGLLSFSKNGTDLGLAFEIPALLKNQPFFASCVLKNAELKF
NFGGEEFKNPPKTGFVAVDQASEGHVVKSSQTGSVKMSEVKATSCGPKALIVEPSKELAE
QTLNNVNQCKRYVDNPKLRDLLIIGGVPARDQLAVLEQGVDIVVGTPGRLDDLISTGKLT
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKHDRSWERLDRKNHILTDEVHAKDNTRPGA
NSSEMWSEAIKILKGEYTIRAIREHNMDQAIIFCRTKIDCDNMEQYFIVQGGGPDKKGHQ
LSCVCLHGDRKPNERKTNLDRFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNY
VHRIGRVGRAERMGLAISLVAMEKEKVWYHTCANRGRGCHNTRLKEEGGCTIWYNEKELL
SDVEEHLKCTITQCEPDIKVPVDDFDGKVTYGKRRAAAGGNYCGHVAALAPTVQELANLE
REAQTSFLHLGYLPNQLFKAF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggcgttatgcctgaaatcgcccaagcagtcgaggagatg
gactggctcctccccacagacatccaggcagagtccattccgttgatcctggggggagga
gatgtcctcatggcggcagagactgggagcgggaagactggggccttcagtatcccagtg
atccagatagtgtatgagactctgaaggaccagcaggaggggaagaaggggagaactgct
gtgaagactggtggagcagtcttcaacaaatggcagatgaacccgtatgacagaagcaca
gcgttcgccattggaccagacggactgtgttgtcaaagcagggagtttaaagaatggcat
ggctgtcgctctaccaaagccatcaccaaggggaagtactactatgaggtatcatgtcat
gaccagggcctgtgtaggatcggctggtctaccagccaggcagctttggacttaggtacc
gataagtacggctttggcttcggaggaacggggaagaaatctcacaacaaacagtttgac
agttatggagaggagttcaccatgcatgacaccatgggatgttatctggatctagacaac
ggactcctctccttctccaaaaacggtactgacctgggcttggcgtttgagatcccagct
cttctgaagaaccagcccttctttgcttcctgtgttctcaagaatgcagagctgaagttt
aactttgggggggaggagtttaagaatcctcccaagacgggcttcgtagcggtggaccaa
gcttctgagggacatgtggtcaaatccagccagacaggcagtgttaagatgtcggaggtg
aaggccacttcctgtggtcccaaagctctgatcgttgagccgtctaaagagcttgctgaa
cagacactcaacaacgttaaccagtgtaagagatatgtggacaatcccaagctcagagat
cttctgatcatcggaggtgttcctgctagagaccagctggctgtactggaacaaggggtg
gacatcgtggttggaacaccaggtcgtctcgatgacctcatctctacggggaaactcacc
ttgtctcaagtccgcttcctggtcctagatgagtgtgatggtctccttactgccggctac
accgactttatcatgagaatctacaaccagattcctcaagtcacctcggatggcaagaga
cttcaggtcatcgtctgttcagcgacactccactccttcgacgtgaagaagctgtcggag
aggatcatgcacttccccacctgggtggacctgaagggagaggattctgtccctgagacc
gtacatcacgtggtcgtacctgttaaccctaaacacgaccgcagctgggaacgcctcgac
cgcaagaaccacatcctgactgatgaggtccatgctaaagacaacaccagaccaggagcc
aacagctcagagatgtggtctgaggccatcaagatcttgaagggggagtacaccatcaga
gccatcagggaacacaacatggaccaggccatcatcttctgtcggaccaagatcgactgt
gacaacatggagcagtacttcatcgtacagggaggaggtccagataaaaaaggccaccag
ctttcctgtgtctgtctccatggtgaccggaagcccaacgaacgcaagaccaatctggac
cgattcaagaaacaggaagtgaagttcttgatctgtacagacgtggcggccaggggcatc
gacatccacggagtcccctacgtgatcaacgtgactctgccagatgagaagcagaactac
gtccatcgcatcggcagagtggggagagcagagaggatggggttggccatctctctcgtt
gccatggagaaggagaaggtgtggtaccatacgtgtgctaaccggggcagagggtgtcac
aacaccaggctgaaggaggagggaggatgtaccatctggtacaatgagaaggagctgctg
tccgatgtagaggaacatttaaagtgtaccatcacccagtgtgaaccggacatcaaggtt
cctgtggacgacttcgacggcaaggtgacctacggcaagcgcagagcagcagcaggtggt
aactattgtggtcatgtggctgcattggctcctacagttcaggagctggccaatctggag
agagaagctcagacctccttccttcacctggggtacctgcccaaccagctgttcaaagcc
ttctga
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