Oncorhynchus kisutch (coho salmon): 109885688
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Entry
109885688 CDS
T09179
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109885688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109885688
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109885688
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109885688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Thc1_RRM
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
109885688
NCBI-ProteinID:
XP_031669700
Ensembl:
ENSOKIG00005026745
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCTFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNSNKGPGSIPEEHREY
IGRVVEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CVLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKSPKVV
TAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLTPPRAHIPSQSKLIQPFVNK
LFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGRQQVRESQGHSTQSWDEDGWVKPHYT
SPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTEGEAQRSHADGWSGYTHSHTHPDTG
SKKIRTDGVCVRTYAGVVDSKTSEGWLKTQSESDSSSMSPIQEEAGSEAGDDASDPAAGE
WQQPSTIQSKKSRKNNRMRKTDGAETTSTLFDVPQVW
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcagactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactgactaacgggttggacacgccagaggagcgctacatgaagctaaaaaagcac
tccatggacttcttgctgtttcagtttggactgtgtacgttcacatatgaccaggcagag
tccaagtacgtcatcaagacttttaatttttatatattcccaaagccgttcaacagaacc
tccccagacaccaagttcatctgccagagttccagcatagacttcctggccagtcagggt
tttgacttcaacaaagtgttccgtcacgggatcccgtacctgaaccaggaagaggaagtg
cagctgcgagagcagtatgaggagaggcggagtcagagtaacggatcaggaaacccctcc
tacatctcccccaactcaaacaaaggccccggtagcatccccgaggagcacagggagtac
atcgggcgggtggtagagaaggtggaatctctgttcactacctcagagaagactgtggac
ctggagccctgcactgggtttcagaggaagctgatctaccagactctcaactccaagttc
ccaaagggtcttcatgtggagaccttggagacagagaagaaagagcggtacatccagatc
agcaaggtggacgacgaggagaggaagaggagagaacggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctgga
aagttggtggttggccacaacatgctgctagacgtcatgcacaccatccatcagttctac
tgcgtactgccagaggacctgaatgactttaaagaagtcactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccactacgcaaccgttcaaggagttgatcaacatcacg
tctctagcagagctgcagaaacagctgaaagagagccccttcaaatctcctaaagttgtg
acggcggaggggttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgccttcatcactggtctctgcttcatctccatggccaactacctaggtactttcctg
actccccccagagcccacatcccatcccaatcgaaactcatccaacccttcgtcaacaaa
ctgttcctgatgaggatcatagatattccctacctcaacatcagtggaccagacctccag
cccaagagggatcatgttctgtacgttaccttccctaaggagtggaagaccagtgacctc
taccagctgttcagtgcctttggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtatctctgagtcagacggaccaggtacagatcgcgatgaacaccagtcgctatgcg
gagagctaccgtatccagacgtatgcagagtatgtccagggcaggcagcaggtcagggag
agccagggccattctacccagtcctgggacgaggacggctgggttaaaccgcactacacc
tccccctctacagttggtgctggtcctactggctacagctacggtcacaacaggccgtcg
ttggggaaacgctgcgtcagtccgatccaggaggagcagcctacggagggagaggctcag
agatcacacgctgacggatggagtggctacacgcactctcacacacaccccgacacgggc
agcaagaagatcaggaccgacggggtgtgtgtacggacgtatgcaggagtagtggacagt
aagacgtcagaaggctggctgaaaactcagtctgagtctgattcgtcgagcatgagtccg
atccaggaagaggcggggtcggaggcgggagacgacgctagtgatccggcggcgggcgaa
tggcaacagccttcaaccattcagagcaagaagagccgcaagaacaacaggatgaggaag
actgatggtgcagagacgacgtctactctgttcgacgtacctcaggtctggtag
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