Oncorhynchus kisutch (coho salmon): 109886212
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Entry
109886212 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: C-myc promoter-binding protein
KO
K20163
DENN domain-containing protein 4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109886212
Membrane trafficking [BR:
oki04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
109886212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
109886212
NCBI-ProteinID:
XP_031668460
Ensembl:
ENSOKIG00005041726
LinkDB
All DBs
Position
Unknown
AA seq
1979 aa
AA seq
DB search
MEDKGPRVADYFVLAGLTDSSTPLEQEIHFHEVCHKTAKPKPPITDVAVVMRSLGEEVPS
WVHVRGITPSGLSADLNNGSLMAPQIXLCYRRGRDKPPLTDLGVLYEWKERLKQGCHIIQ
TTPSGRPANISSTSSQRIYVTYRRATESQTYAALAVTDICVIIPGKGETPPHTFCKVDKN
LNSSMWGSSVYLCYKKSVAKPNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATIE
AWPAQTKYPLPVFSTFVLTGSSGEKVYGAAIQFYEPYSQDCLTDQQRSQLGLPGLDHGPS
SPASSPATSPSTPAPGPRALHTNKCICLLSHWPFFDAFRKFLTFLYRYCISGPHTLPIEK
HISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSILLQNLGPENAIT
LLVFAVTEHKILVHSLRPAVLTSVTEALVAMIFPFHWPCPYIPLCPLALAGVLSAPCPFI
VGVDSRYFDLYDPPLDVSCVDLDTNTISHNGDKRALTWKILPKKACKNLMNVLNNLYQQL
VDGQQRPDGLLELSMSDCTELACGKSLHSLEMEIQEAFLRFMAAILKGYRSYLRPITQAP
SEKTTDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFTRFIEECSFVSDEDASLAFFDDC
VDKVDSDKPDETRLIEIDESQRSEHTVFITPPELPHLPDGEEHPLCYSYEGFPVLSLDLF
DPMEGLRPPASRLAARQSCPTSPAPMFRRTKQEIKLSQKLAKKYSSIPQMWSKCLLCHCY
GLWFICLPSYVKVCHSKVRALRTAYDVLRKMQDKKLQPPDEVCYRVLMQLCGQYGQPVLA
VRVLFEMKKAGVQPNAITYGYYNKAVLESTWPSSTRGGYFMWMKLRNVVMGVAQFRQALR
KQQPPSTQSPLSDGSDLDAVSHGSLDSSADTNTAEQGPYVPDSIKVDPTDDRRSTGEQSD
LGYNSLSKEEVRRGEPSLLYRDSTQDKDCSSLSETESAKSSGDCLPQQDFPEVNGPFKRH
NSGIVRGNCPYDDVACEPKRSTSTDHVAGLVLSSSLNEVGVVETNSLRRRHLTALEEGGG
SRSSGGGGVGGHDWQGVRGCRLSGDNRVVSGSSGTPVLGLGLHQGETDPARIAENLGADT
KILLGTSFSQTNRPRTLVLGGSEGVGAAGGRTRRCRRRDSPEDGEERDWSDEDKNDKNNT
DAIFDLEDLDLDGPTTENVAKTSQSRKRTVERSASYGGVGVASASRGTVKRTGIETGFDP
LSLLAAESKSQGDREDDLEVEMDGVATPTGRRQDHLAREIEMYMNHMGSPLNSRTPSLDL
QDPSSPLFLHPPPPLITTPRRASLPHTSPLRTGGLPRSRTHNSPSPSQPARQRLWSSPPC
PRSTPSPQPSPYRERERDRDLGLLSPSLSSSSFALDQLLTPTLDVLKSSMVSAGKGVAEK
ASRWYSRLATSYTVPTKDGNCDRLSVSSLGMDPDCSSLLDVDEEGLGDPDGSITSPQRNG
PGPRRSPRRSPSRRSPPRSRLDSSTHRQTGFPPPDCSDLGSSHYTSSTSVFQNHAMELLI
SSCSRCKTCDGLVYDEEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDLRGPGRFYLK
SSPSAEEAVSSSYSVSTGLDTGTSTLSTPCPTTVLSPLSPRITVEGCSGNNRLSSSRAQC
IEIPTERRQGALSPGSAMVRSVSAFDPMEEPTRLNHNVPTSGSLPSRLNEASDPLSVDME
WRLHHPEPVTVPYLSPLVLWKELESLLENEGDPVITVSAVVDHHPIIYWNLVWSFRRLDL
PSNLPGLILTSEHCNRGSTVPRHWMSEDSKHVLIQILWDNLKLHRDLIQPFYILWNTQSV
GYPLCRPVSEAERPFGEELLHSVVKSIQRNDVSRPMGQLLQLLGQSLGVKRQRSLYRDIL
FLCLVALGKDNIDIDAFDREYKMAYDHLSPNLVKLTHNCDRPPSAGVMECRKTFGEPYL
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaggggcctcgtgtagcagactacttcgtgctggctggtctgaccgactcc
tccacgcctctggagcaggagatccacttccacgaggtctgccacaagacggccaaaccc
aagccgcccatcaccgacgtcgctgtggtgatgcgctcgctgggggaagaggtgccttcc
tgggtacacgtgcgtggaatcacgccgtccggcctgtcagctgacctgaacaacggaagt
ctcatggcgccacagatcnttctgtgttacagacgaggacgagacaaaccaccactcact
gacctgggtgttctgtatgagtggaaggagcggttgaagcaaggttgccacatcatccag
accacgccctccggacgccctgccaacataagctccacctcctcccagaggatctacgtg
acgtatcgccgcgccacggagagccagacctacgccgccctggccgtcacagacatatgt
gtcatcatccccggcaagggagagacgccaccacacaccttctgcaaggtggacaagaac
ctcaacagcagtatgtggggttcctctgtctatctgtgttacaagaagtctgtggccaaa
cccaacaccatagcctacaaggcaggtctgtttagcaggtatcctgaggaggactatgag
tccttccccctgcctgagtccgtgcctctgttctgtctgcccatgggggccaccatcgag
gcctggccggcccagaccaaataccccctgcctgtcttctccaccttcgtactgaccgga
tcctctggagagaaggtgtacggtgcagccatccagttctacgagccctactcccaggac
tgtctgaccgaccagcagcgctctcagctgggtctgccggggctggaccacgggccctct
tccccagcctcatccccagccacctccccctccaccccagctccgggccccagagcgcta
cacaccaacaagtgtatctgtttgctgtctcactggcccttctttgacgccttccgcaag
ttcctcaccttcctctatcgatactgcatctctggacctcacaccctgcccatcgagaag
cacatctcccacttcatgcacaaggtccccttcccctcctctcagaggcccaggatactg
gtgcagctctctcctcacgacagcctgatgttgagccagcctgtgtcatcccctctacca
ctcagtggtggtcggttttccatactgctgcagaacctcggtccggagaatgctataacg
ctcctggtgtttgctgtgacagaacataagatcctggtccactctctacggcccgctgtt
ctgaccagtgtcactgaggctctggtggctatgatcttcccattccactggccgtgtccg
tacatccctctgtgcccactggctctggcaggggtcctctccgccccctgccccttcatt
gtgggggtcgactcacgctactttgacctttacgacccccctctggacgtcagctgtgtc
gacctcgacacaaacaccatctcccacaacggagataagagggccctgacctggaagatc
ctgccaaagaaagcctgtaaaaacctgatgaatgtgctgaacaatctctaccagcaactg
gtggacggtcagcagcgtcctgatggcctattggagctgagtatgagtgactgtacagag
ctggcctgtgggaagagcctccacagcctggagatggagatacaggaagccttcctcagg
ttcatggcggccatcttgaaaggctaccgctcatacctgagacccatcacccaggccccg
tctgagaagactactgacgcctcctctctctttgacctgcaagggttcctgaagagcaga
gaccggtcccaccagaagttctactccctgatgaccaagactcagatgttcaccagattc
atagaggaatgctccttcgtctcagacgaagacgccagcttggccttcttcgatgactgt
gtggacaaggtggacagcgataagccagatgagaccaggctgatagagattgacgaatca
cagcgcagcgagcacacagtcttcatcacaccccctgagctaccccatctgcctgatgga
gaggagcacccactctgctacagctatgaaggtttcccagtgttgagtcttgatctgttt
gaccccatggaaggcctccgaccccctgcctctcggctggctgcccgacagagctgccca
actagccctgcacccatgttcagacgcaccaaacaggagatcaagttgtctcagaagtta
gccaagaagtactcttccatccctcagatgtggtccaagtgtctgctgtgccactgctac
ggcctgtggttcatctgtctgccgtcctacgtcaaggtgtgccactccaaggtgcgggcg
ctgcgcaccgcctacgacgtcctcaggaagatgcaggacaagaaactacagcctcccgac
gaggtctgttacagggtcttgatgcagctgtgtggtcagtacggccagccagtcctggcg
gtcagagttctgtttgagatgaagaaggctggagtccaacccaacgccatcacctacggc
tactacaacaaggcggtgttagagtctacctggccctccagtaccagaggaggttacttc
atgtggatgaagctgaggaacgtggttatgggtgtggctcagttcagacaggcgctacgc
aaacagcagcctccatccactcagagccctctgtcagatggcagcgacctggacgctgtg
agtcacggcagcctggatagctctgccgacacgaacacggccgagcagggcccctacgtc
cctgactccatcaaagtagaccccactgacgataggcgtagcacaggtgagcagtcagac
ctggggtataactccctctctaaagaagaggtacgtagaggagagcccagcctgctgtac
agggacagcacccaggacaaggactgcagctccttgtcggagacagagagtgctaagagc
agtggagactgtctccctcaacaggacttcccagaggtcaacggtccattcaagcggcat
aattccggcatcgtccgcggcaactgtccctatgacgatgtagcctgtgagcccaagagg
tcaaccagcacagaccatgtagcaggtctcgtgttgagctcctctctgaatgaggtaggt
gtggttgagaccaacagtctgaggaggagacatctcactgcccttgaggagggaggtggc
agtaggagtagtggtggaggaggagtaggaggccatgactggcagggtgtgcgagggtgc
agactgagtggagacaacagggttgtcagtggtagcagtggcacgccagtgttgggtctg
gggctgcaccagggagagactgacccagccaggatagcagagaacctgggggcagacacc
aagatcctcctggggaccagcttcagccagaccaacaggccgcggacgttagtcctggga
gggtcagagggggtaggagcagccgggggaagaaccaggcgctgcagacgtagagacagc
cctgaagacggagaggagagggactggagtgacgaggacaagaatgacaagaataataca
gacgccatctttgatctggaggacctagatctggacggaccaaccacagagaacgttgct
aaaaccagccaatcacggaagaggacggtggaacgcagcgccagctatggcggtgtgggt
gtggcctcagcctcacggggcaccgttaaacgaacggggatcgagacaggcttcgatccg
ctgtccctcctggcggccgagtccaagtcccagggagacagagaggacgacctggaagtg
gagatggatggggtcgcgacccctacgggccggcgccaggaccacctggctagggagata
gagatgtacatgaaccatatgggttctcctctgaacagccggacacccagtttggacctc
caggacccctccagtcccctgttcctccaccctcctcccccacttatcaccacccctcga
cgggccagtctcccccatacctcccctctcaggacaggaggattacctcgctccaggacc
cacaactccccctcgccctcccagcctgccagacagaggctctggtcctcacccccctgt
ccccgctccacccccagcccacagcccagcccctaccgggagagggagagagaccgggac
ctgggtttgctgtccccgtctctgtcctcctcctccttcgccctggaccagctcctcacc
cccaccctggatgtgttgaagagcagcatggtctcggcagggaaaggtgtggcagagaag
gctagccggtggtactctcgcctggccacctcctacaccgtgcccaccaaggatggtaac
tgtgaccgtctgagtgtgtcctctctgggcatggaccctgactgctcctccctgttggat
gtggatgaggagggcctgggggacccagacggctccatcacctcccctcagagaaatggc
cccgggccccgtaggagcccaaggagaagcccatccagacgcagtcccccgaggagcaga
ctggacagttccacacacagacagacaggctttcctcccccagactgctctgatctgggc
tcgtctcactacaccagcagtaccagtgtcttccagaaccacgccatggagttgttgatc
tccagctgttctcgctgtaagacgtgtgacggtctggtgtacgacgaggagatcatggca
ggatggacggctgacgactccaacctcaacaccacctgtcctttctgtgggaaccccttc
ctccccttccttaatgtagagatcagagacctgagaggacctgggaggttctacctgaag
agcagtccgtcagcggaggaggctgtgtcatcgtcctactctgtgtccaccggtctggac
accgggacgtccactctgtccactccctgtcccactactgtcctgtctcctctctcaccc
aggatcactgtagagggctgctctggtaacaacaggctgtcgtcgtccagggcccagtgt
atagagatccctacagagcggcgtcagggggccctgtccccggggtcagctatggtgcga
agtgtcagtgcctttgaccccatggaggaaccaactcgactcaaccacaatgtacccact
tcaggcagcctgcccagccgactcaacgaagctagcgaccccctgagtgttgatatggag
tggcgtctccaccacccagaaccagtcacagtaccctacctgagtcccctggtcctgtgg
aaggagctggagtccctgctggagaacgagggagaccctgttatcacagtgtcagccgtg
gtggaccaccatcctatcatctactggaacctggtttggtccttcagacgtctggacctg
cccagcaacctgcctggactcatactgacctcagagcactgtaacaggggatctacggtc
cctcgccattggatgtcagaggacagtaaacacgtgttgatccagatcttatgggacaac
ctcaagctgcaccgggatctcatccagccgttctacatcctgtggaacacgcagagtgtg
ggctacccgttgtgtcgtcctgtgagcgaggcggagcgtccgtttggggaggagctactc
cacagcgtggtcaagagcatccagaggaacgacgtctctcgaccaatgggacagctccta
cagctgctggggcagagcctgggggtcaagaggcaaaggagtctgtacagagacatcctc
ttcctgtgtctggtggctctgggaaaggacaacattgacatcgacgcttttgaccgcgaa
tacaagatggcgtacgaccacctcagccccaacctggtgaagctgacgcacaactgcgac
cggccgcccagcgctggggtcatggagtgtcgcaagaccttcggagaaccctacctctga
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integrated database retrieval system
