Oncorhynchus kisutch (coho salmon): 109887024
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Entry
109887024 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109887024
04020 Calcium signaling pathway
109887024
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oki04040
]
109887024
Ion channels [BR:
oki04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
109887024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
109887024
NCBI-ProteinID:
XP_031669630
LinkDB
All DBs
Position
Unknown
AA seq
1951 aa
AA seq
DB search
MGNLITQSQVYTQPSMDNLITQSQVITLEGWVDIMYYVMDAHSFYNFIYFIFLIIVGSFF
MINLCLVVIATQFAETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRYVSHLYR
KLTRRVQRMYTTWHSKRRKKVNPNGGGSGPGSAAERPETPPGSAPYTTCCSITSATTVGT
ATEDTPPRCGEELEMRSLPVPGRDPSVTPGLGSSLLGRLNGGMNYPIILPSFPPPHIPPR
PPPHTTSHPPPHTALQPPLQTPPQPPTHTTPHTLPTQPQRPSPHSPRPSQKTVRTPSASC
TNSWDSTAILGCCTSWLAWCPPLSSWTVGAARCVPAPRGHGAGPERPEGSRGEAHTLHDF
PQGGEGRGGRGRRRRKAGLGLGVKRASNRLLDLGTAFRDRLKRIVDSKYFNRGIMTSILI
NTLSMGIEYHQQPVELTDILEISNIVFTCMFLLEMMFKLLAFGLFGYIKNPYNIFDGIIV
IISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCTLLMLF
IFTFSILGMHLFGCKFNQQMENGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMA
STSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRADSDDDKRSDDDGEEEKKE
KVEELKDTELKMYSLMMTANGHTDRSTLAPPITITRTAATPVPTPNESVLGEGLVCSDFG
DSRRGSAAASIDPSAYDQRSLSSPGQHSPLPPRGQGSVSGWGSRRSSWNSLSRAPSLKRS
KTSGERESLLSGEGGGEEEEEALELLQVSSLGPSVTGEYGDCNGRSLHHMTYDPNKDLSP
DDDMEEDNLWFRVRRTLQSYKPRWCREHEDWNLYLFSPQNSFRVWAKGMISHKMFDHVVL
LFIFLNCITIALERPGILPHSTERVFLSVSNYVFTVIFLAEMTVKIVALGFCWGKQSYLK
SSWNVLDGILVFVSLVDILVSLALTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVE
TLITSLRPIGNIVLICCAFFTVFGILGVQLFKGKFYLCEGLDTRNITTKSDCLLANYRWT
RRKYNFDNLGQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLI
VSFFVLNMFVGVVVENFHKCRQDQEEEEQRLREEKRLKILEKKRRKAQQRPYYADYSPVR
LTIHTLCTSHYLDLFITIIIGINVVTMSMEHYNQPQYLEEALKYCNYLFTCIFIIETLLK
LVAFGLHRFFKDRWNQLDLAIVLLSIMGITLEELKMNASLPINPTIIRIMRVLRIARVLK
LLKMATGMRALLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNDSNPCEGLSR
HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECRPEERSCLTYLPLMSPVYFVTFVLMA
QFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIALEMERARRLSSATNASALGGAYVGPR
PRSPDQEEEGQCSQEEELLSPRKMSVSRMHSLPNDSYMFPPVRSASAPYPLQEHSSPLHQ
PSGSVTSVHSQPCEDQAVLPGLSHPVPAHIAPPRPSPRGLRRQVAVKVDSVEVQSVASVD
RQDPLSTLHLLSPSRSPSPPFLSDPADEEVWHITSSARHWWDRHGSGRCHSLSPYASPDS
PPSLRSRGSALSLLGAGLQAHDPRKGFSVDTQGFLDKPRCPDDQRRHSIEICPSPPEDPL
LREVDGEERRPRGQGSEVRGHRKKRMSPPCISIHPPCDPAGRAPSEPQADCNPLLRRRTP
SYDVADAHTPTHRLTPTHSPVRTLTPTHTPTLTPTHHHTLVQTLPHAVTHTQTHTHTHRL
PHAHTLIRTHTLPHSHTHTPSPTHTLSLNSDTRPSSLYSDYKPLPQFTFDQPEHRYTSGM
SAGLSSNEPATSPSHFNSRAGFSSMNRRTAQ
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacctcatcactcagagccaggtatatacccagcctagcatggataacctcatc
actcagagccaggtgataaccctggaaggctgggtggacatcatgtactacgttatggat
gctcactccttctacaattttatatattttatattcctcatcatagtgggctctttcttc
atgatcaacctgtgcctggtagtcatagcgacccagtttgcggagacgaagcagcgtgag
aacgcgttgatgcgcgagcagcgagcgcgttacatgtccaacgacagtactctggccagc
tacagcgaaccgggatcctgctacgaagagatgctgagatatgtttcacacctctaccgt
aaactgacccgacgagtacaacgcatgtacacaacctggcacagtaagcgtcgtaagaag
gtaaaccctaacggaggaggaagtggtccggggtcggccgcagaacgtccggaaacgccc
cctggctccgccccatacacaacctgctgcagcatcaccagcgccaccactgtcggcaca
gcaacggaggacacacccccgcgttgtggggaggagctggagatgaggtcacttcctgtc
ccgggtcgtgacccctctgtgacccctgggctggggtcgtctctcctgggtcgtctgaac
ggagggatgaactaccccatcatcctgccctcctttccccctccccacatacctcctcgg
cccccaccccacacaacctcacatccccctccccacacagccttacagccccctctccag
acacccccacagcccccaacccacacaaccccacataccctccccacacagccccagagg
ccctccccacacagccctcgcccctctcagaaaacagtccggaccccctcagcaagctgc
accaactcatgggacagcacagccatcctcggctgctgtaccagctggctggcgtggtgc
cctcccctctcctcctggactgttggggctgcccgctgtgtgcccgcccctagagggcat
ggagctggacctgagcgacctgaggggtctaggggagaggcccacaccctgcacgacttc
ccccagggaggagaggggcgcggcgggcgtgggaggcgccggcggaaggcagggctgggg
ctcggggtgaagagggccagtaacaggctgctggatctggggacagcattcagagacaga
ctgaaacgcatcgtagacagcaagtacttcaacagagggatcatgacctccatcctcatc
aacactctcagtatggggatagaataccatcaacagccggtggagttgactgatatcctg
gagatcagtaacatagtgttcacctgcatgttcctcctggagatgatgttcaagctgctg
gccttcggtctcttcggctatatcaagaacccctacaacatctttgacggtatcatcgtc
atcatcagtgtttgggagatcgttgggcaggcggacggcggtttgtctgtcctgcgtacc
ttccgtctgctgcgggtcctgaagttggtccggttcctgcccgctctgcgcagacagctg
gtggttctgatgaagactatggacaacgtagccaccttctgtacactgctcatgctcttc
atcttcaccttcagtatcctaggcatgcacctgtttgggtgtaaatttaatcagcagatg
gagaacggagacaccatcccagaccgcaagaactttgactcgctactctgggccatcgtt
actgtgttccagatcctgactcaggaggactggaatgtggtcctgtataatggcatggcc
tccacctctcctctcgctgctctctactttgtggctctgatgacgtttgggaactacgtc
ctcttcaacctgctggtggccatcttggtggagggcttccaggctgagggtgatgccaac
cgggcggactctgacgatgacaagaggtctgatgacgatggagaggaggagaagaaggag
aaggttgaagagctgaaagacacagagctgaagatgtattctctgatgatgacggccaac
ggtcacacggaccgcagcactctggcccctccaataaccatcacgcgcacggcggcgaca
cccgtgccgacgcccaatgagtccgttctgggggaggggctcgtgtgttcagacttcggg
gattctcgtcgcggcagcgctgctgcttccatagacccctcagcctacgaccagcgctct
ctgtccagccccggccagcactcgccgctccctcccagaggtcagggttcagtcagtggg
tggggcagcaggaggtcaagttggaacagcctcagccgcgcccccagcctcaaacgcagc
aaaaccagcggagagagggagagtctgctctcaggggagggaggaggagaggaggaagag
gaggccttagagcttctacaggtgtcctctctgggcccgtctgtaacaggggagtacggg
gactgtaacgggaggagtcttcatcacatgacctatgaccccaacaaggacctttcacct
gacgatgacatggaggaggataacctgtggttccgggtcaggagaacgctgcagagctac
aagccacgctggtgtagagaacatgaagactggaacctctacctgttctcccctcagaac
tcgttccgtgtgtgggctaaggggatgatttctcataagatgtttgatcacgtggtcctc
ctcttcatcttcctcaactgcatcaccatcgctctggagagacccggcattctgcctcac
agcaccgagagagtgtttctgagtgtctctaactacgtgttcactgtcatcttcctggct
gagatgactgtcaagattgtagcgttggggttctgctggggtaaacagagctacctgaag
agcagctggaatgttctggatgggatcctggtgtttgtctctctggtggacatcctggtt
tctctggccttgaccggagggaaccgcatcctgggaatcctcagagtactacgactgcta
cgcacactacgacctctcagggtgatcagtcgagccccagggctgaagctggtagtggag
actctgatcacgtctctgagacccatcgggaacatcgtcctcatctgctgcgctttcttc
actgtgtttggaatactgggagtacagctgttcaagggtaaattctacctctgtgaaggc
ctggacaccagaaacatcaccaccaagtcagactgtctgctggccaactaccgctggaca
cgcaggaaatacaacttcgacaacctgggacaggcgctgatgtctctgttcgtgctgtcc
tgtaaggatggatgggtcaacatcatgtatgatggtctggatgcagtgggagtagaccag
cagccggtgaggaaccacaacccatggatgctcctctacttcatctccttcctcctcatc
gtcagtttcttcgtcctcaacatgttcgtgggtgtggtggtggagaacttccacaagtgt
cgtcaggaccaggaagaggaagagcagcggctacgggaagagaagaggctcaaaatcctg
gagaaaaagcgcaggaaggcccaacagagaccctactatgcagactactcccctgtgcgt
ctcaccatccacacgttgtgcaccagccactacctggacctcttcatcaccatcatcatc
ggcatcaacgtcgtcaccatgagcatggagcattacaaccagccacagtatctggaggag
gctctgaagtactgtaactacctgtttacctgtatcttcatcatcgagaccctgctgaaa
ctagtggccttcggactgcacaggttctttaaagacaggtggaaccagctggacctggcc
atagtgctgctgtccatcatgggcatcactctggaggagctgaagatgaacgcatcgcta
cccatcaaccccaccatcatcaggatcatgagagtcctgaggatcgctagagtgttgaag
ctgttgaagatggctacagggatgagagctcttctggacacggtcatgcaggccttgcca
caggtggggaatctgggtctgctcttcatgttgctgttcttcatctacgcagcactggga
gttgagctgtttgggaaactggagtgtaacgatagtaatccgtgtgaaggtctgagtcgc
cacgccacctttgagaactttgggatggcgtttctcacgctgttcagagtctctactggg
gacaactggaacggcatcatgaaggacacgctgcgtgagtgtcgtccagaggagcgctcc
tgtctgacctaccttcctctgatgtctccggtttacttcgtgaccttcgtcctcatggcc
cagttcgtgctggtcaacgtggtggtggcggtgctgatgaaacacctggaggagagcaac
aaggaagccaaggaggacgcagagatggacgcagagatcgcgctggagatggagagagct
agacgtcttagctccgccactaacgcgtcggcgctaggcggggcctacgtggggccacgc
ccacgctcacctgatcaggaggaggagggtcagtgcagccaggaggaggagcttctgtcc
ccaaggaagatgtccgtatccaggatgcattctctccctaacgacagctacatgtttcct
cctgtacgatctgctagcgccccctaccctctacaggaacacagcagccccctgcaccaa
ccctcaggctctgtgacatcggtgcactcccagccatgcgaagaccaggctgtactgccc
ggcctctctcaccctgttcccgctcacatcgccccgccaaggccctcgcccagggggctg
cgtagacaggtggctgtgaaggtggactcggtggaggttcagagtgttgcctcagtagac
agacaggaccccctctcaaccctccacctgctctccccctcccgctccccctctccgccc
ttcctctcggatcccgccgacgaggaggtgtggcacatcaccagctcagcgcgccattgg
tgggacagacatggaagtgggcggtgtcactccctctccccctacgcctcccccgactcc
ccaccctccctgaggagccgagggagtgcgctcagcctgctgggggcggggctacaagct
cacgacccgaggaagggcttcagcgtagacacccagggcttcctggataaaccccgttgt
cctgacgaccagcgacgacactccatcgagatctgcccgtcccctccggaggacccgctg
ctacgggaggtggacggggaagagaggaggcccaggggtcaggggtcagaggttagaggt
cacaggaagaagaggatgagcccaccctgcatctccatccaccccccgtgtgacccagca
ggccgcgccccctcggagccgcaggcagactgcaacccgctgctgagacgcaggaccccc
tcctatgacgtcgccgacgcacacactcccacacacaggctgacgccgacacactcaccg
gtacgcacactcacgcctacacacacgccaacactaacgccgacacatcaccacacactc
gtacagactctcccccacgcagtaacacacacccagacacacacacacacacaccgcctg
ccccatgcacacactcttatccgtacacatactctacctcattcacacacacacactccg
tcccccacacacaccctgtccctgaactccgacacgagaccttcctctctctacagtgac
tacaagcccctcccacagttcaccttcgaccaaccggagcacagatacacgagtggcatg
tccgctggcctatcgagcaatgaaccagccacaagtccctcgcactttaacagcagggcg
gggtttagctcgatgaacaggagaactgcccaatga
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integrated database retrieval system
