Oncorhynchus kisutch (coho salmon): 109887214
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Entry
109887214 CDS
T09179
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109887214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109887214
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109887214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
109887214
NCBI-ProteinID:
XP_031671971
LinkDB
All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
MSAEEAADKTTPADASAGDGGDEEEEWLYGDDDERADEEEAKLSAAVSAPIPATESEEAA
TTGNGVEAQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAG
ARPYGTVGNKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNEDTW
KGYCDKQKRLRMGLEVVNISSTTSKITVQQGRTGNEKEVSLPIHTSKPDFPTPASLYKTS
MNMNTTRISPPQWTAPPVQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQVI
SEHSSSDAEQNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPPG
FPPPSGPPPSLIPTLDSSGHPGGYDVRPVPPYPFPTGGFPPPMTGGYPPPMPGVVSPWPP
MMDQSKQWDYYPPGPGPGPGPGPRREDKREKERERPRERPHEREREREHSPSTMAYNSDE
ERYRGYREYQAERGYSGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRGSGGERGGGGGE
RHRDRSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEG
KEPSDDMGGDQENQDTME
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaaaacaaccccggcggacgcgagtgcgggagatggc
ggagacgaggaagaagagtggctctacggagatgatgatgagagagctgatgaagaagag
gccaaactatctgctgctgtcagtgcacctattcctgctactgagtcagaagaggcagct
actacaggcaacggagtggaagctcaggagaaggagccaggagatgatgacgacagcgat
agcgatagcgacgatgatgacgatgatgttcgtgtcaccatcggagacatcaagaccgga
gccccacagtacacaacgtatggagtggctcctgttaacctgaacataaagacagcggga
gccagaccctatggaacagtagggaacaagttaaagggtgtggatctggaggccccggga
aacatcaatggagtcccagtagtggaggtggacatggagacattcgaggagaaaccctgg
aggaaaccaggtgctgacctgtctgactactttaactatgggttcaacgaggacacgtgg
aagggctactgtgacaaacagaagaggctgaggatgggcctggaggtcgtcaacatctcc
tccaccaccagtaaaatcactgttcagcagggcaggacggggaatgagaaggaagtgagt
ttacccatccacacgtccaaacctgacttccccactccagccagcctctacaagacatcc
atgaacatgaacactaccaggatctcccccccacagtggactgctccccccgtccaggac
atgtcctactatacgaagaccagtggtacgatcgacgtgattggaggagggaccgctacc
atcagcagagtggagggacgacgaagacacaacctggagggaaacaacatccaggtgatt
tcggaacactcgtcgtcggacgctgagcaaaaccccaacaagatgccccccttcttccca
cccgggcccctccccccaaacatccctcctcccccattcctcccccctcctcccaacgtc
agccaggctccccctctcatccccccaccaagaatacctatgaatgtccctcctcctggt
ttccctcctcccagcggcccccctccctctctcatccccaccttggacagcagtgggcat
ccaggtggatatgatgttcgtcccgttccaccataccccttccccacaggtggtttccct
cctcctatgacaggtggctaccctcctcctatgccaggtgtggtgtctccatggcctcct
atgatggaccagtctaaacagtgggactactaccctccaggaccgggaccgggaccagga
ccaggacccagacgggaggacaagagggagaaggagagagagagacccagggagagacca
catgagagggagagagagcgagagcacagcccctccactatggcttacaacagtgacgag
gagcggtaccgtggttaccgggagtaccaggcggagcgaggctacagcggcggtgaccgc
ggaggaggtgaccgtggagggggggagcgtggaggcgtagaccgtggaggtgaccgtgga
gggggggagcgtggcggtgaccgtgggagtggtggtgagcgtggtggtggaggcggggag
cgtcacagagacaggtcgagccgtgagaaggaggagagacacagagagagaagacacaga
gagaaggaggaggggagacacaagtcatcacgcagtagcagcaggaggagacatgatagt
gaagaaggagacggtcacaggagacacaaacacaagaagagcaagaggagtaaggagggc
aaggaacctagtgatgacatgggaggagaccaggagaaccaggacaccatggagtga
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