Oncorhynchus kisutch (coho salmon): 109887623
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Entry
109887623 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109887623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109887623
03036 Chromosome and associated proteins [BR:
oki03036
]
109887623
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109887623
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109887623
mRNA degradation factors
5'-3' decay
Decapping complex
109887623
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109887623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109887623
NCBI-ProteinID:
XP_031658296
Ensembl:
ENSOKIG00005001040
UniProt:
A0A8C7EZJ8
LinkDB
All DBs
Position
LG2:complement(7862559..7877650)
Genome browser
AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTSGSLASAPQPDAQQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSADPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacggagaacccaacatccatcatgggactgaacaagcccaatggg
cagtttagaggaccactcaagccagttggactaacatcgggatccctggcatctgcccca
caaccagatgcccaacagaagggaggtaacattccccagggcagtgggggtatccggttt
ggtgatgactggaagaaatgcctgcagcttccacagaaagactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagtttgaggactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatccttgcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctactcgagagttagccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggcggggtcaaggtcatggccaccacaggaggcaccaacctgagggacgac
atcatgcgtctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggagtggccaaagtggataaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctgatcgaagacatcattagcttcctggct
aagggtcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgaccctgaagggc
atcacccagtactacgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccattatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtatagaaaccgtgtgttccatgacttcagaaacggactctgcaggaacttg
gtctgcacggatctgttcaccaggggaattgacattcaagcggtgaacgtagtgatcaac
tttgacttccccaagaacgctgagacgtacctgcatcgcatcggcagatcagggaggttt
ggtcacctgggtctggccatcaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgactgacattaagcccatccccggcagcatcgacaagggtctg
tacgtggcggagttccactctgccgacccagacgcagaagacgagatcagaggcaaggac
ggcgagttaagcgcagcataa
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