KEGG   Oncorhynchus kisutch (coho salmon): 109888430
Entry
109888430         CDS       T09179                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC5-like isoform X1
  KO
K03007  DNA-directed RNA polymerases I, II, and III subunit RPABC5
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03020  RNA polymerase
oki03420  Nucleotide excision repair
oki04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109888430
  09124 Replication and repair
   03420 Nucleotide excision repair
    109888430
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    109888430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oki03021]
    109888430
   03400 DNA repair and recombination proteins [BR:oki03400]
    109888430
Transcription machinery [BR:oki03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     109888430
  RNA polymerase III system
   RNA polymerase III
     109888430
  RNA polymerase I system
   RNA polymerase I
     109888430
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109888430
SSDB
Motif
Pfam: RNA_pol_N YABBY_N
Other DBs
NCBI-GeneID: 109888430
NCBI-ProteinID: XP_020335207
LinkDB
Position
LG3:complement(71017281..71018384)
AA seq 96 aa
MFFLCAFLSVCKGYCGTYFTLQAPVDRIKMIIPVRCFTCGKIVGNKWEAYLGLLQAEYTE
GDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK
NT seq 291 nt   +upstreamnt  +downstreamnt
atgttcttcctgtgtgcgttcttgtctgtttgcaagggttactgcggaacatattttact
ttacaggccccagtcgatcggatcaaaatgattatcccggtccggtgcttcacctgcggg
aaaatcgttgggaataaatgggaggcgtaccttggcctccttcaagctgaatacactgaa
ggtgatgcccttgatgctcttggtctgaagaggtattgctgtcggaggatgctgctggct
catgtagacctcattgagaagttgctgaattatgcacccctggagaaatga

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