Oncorhynchus kisutch (coho salmon): 109888734
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Entry
109888734 CDS
T09179
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109888734
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
109888734
3'-5' decay
Other 3'-5' decay factors
109888734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
PhoH
AAA_16
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
TPR_1
Motif
Other DBs
NCBI-GeneID:
109888734
NCBI-ProteinID:
XP_031685204
Ensembl:
ENSOKIG00005047411
LinkDB
All DBs
Position
LG1:62875840..62936928
Genome browser
AA seq
2039 aa
AA seq
DB search
MADRRVEKSCEEASGSLARREYEAAVSHCTDALLALGPPAPPSPGPPASNAPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEEVRDGWQFRPPPRGVTS
SEEYTLCKRFLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYME
ALIEKWMNSLSPEKVLSDYLDGVSVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIA
LLYDAHRPHFSITGVSVGDAGAQRLQAAAEGCQEWTAGEEALAANNGMDHCVYTVVVGFS
TEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIV
EFSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LLLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQF
QLNRLPLCEMHYALDRIKDNGILFPDTSLTPTIPWSPNRSNSVVEGNNENQKWHWLRVPD
LNLPDIDPSTAVPWQWDEQLDPRLNAKQKEAILAITTPLTIPLPPVLIIGPYGTGKTFTL
AQAVKHILKQDDSRVLICTHSNSAADLYIKDYLHPYVEAGNAHARPLRVYFRNRWVKTVH
PLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLSTSQYLCQLDLEPGLFSHILLDEAAQ
AMECETIMPFALASKSTRIVLAGDHMQLSPFVYSEFSRERNLHVSLLDRLYEHYPAEFPC
RILLCENYRSHEAIISYTSELFYDGKLMASGKQPSHKDFYPLTFFTARGEDVQEKNSTAY
YNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVSPYADQVFRIRAELRKKRMHEVSVE
RVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAI
TRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHENASLHGITFEQIKAQLEALELKKTY
VLNPLAPEFIPRALRPQPAQHPHHHQHHHQHPHPQGHTAIKQPQQQQPQQSPPKGKGQHA
NHTEHFPPEGFVQPNPAVLMGNPIRAFTPPLGGTPGGMGKSPSPVQRIDPHTGASILYVP
AVYGGNMVMSMPLPSVPIQLPWPGYQNRFAMDPRIMSHQAAMAYNLNLLQAQNRGSPIPY
GGVTHPSPLGMGQQTSPDKELQADSVRNGKMDGCAKSEQSRLQTPERKTSEMKDKQGECD
PGGGRGLDSQTDGLGFPNAMLHRKDNSSQRPLNYHLAPPNPAFAPHPVGRAFPPQYPGVS
RLPFRVPTQHPGGGPAMGQPNQHHSAQLSPAYASGNHNPSFFGGAMASHRGVPETEEEGP
EEIGNSIRSQMGHQVGHHPALSQPSRVNSFGEENQEGGLGEGMDSLTLEALSQQARLGQW
GEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLLARANWRMSAGMEDEAGGPPFTRFPG
LLREMPPQDQPDPRDPVEMQPPPQSRLLQYRQVQSRSPGDPSSPSSVTSNHTGPFPPGPY
PGRDPTSHELELLNNPGLHQHPGNQLYNPNAYPQQLGHSTTPPPQVKYLLQEAQWPHGGA
SVAQNHMLAQGQGFPYGLPVMAHPSRQEQVHLMQLHHQQQQQHQQQQQQQQGQGPGQEPY
HPLSPRTTGATALHNVEEYEPRGPGRPLYQRRISSSYPDEGSPANAAALAQQQPQPCPPD
PQEHPHTHQHPHPHQHPHAPYGYPPPELWPGNGGGPGPFQNIPCNGASTLIQHRDLLVAS
KALRQAAEEQMKAEAAAAVAAAQPPAHSLQHLGQFPPLMPNSKPQQQQQQAAPEPGQGSG
GPQNPGKPPTMSYASALRAPPKPRARPEQVKKHSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagtggagaagtcatgtgaagaagccagtggatcgttagccaggcgg
gagtacgaggcggcagtgagccactgcacagatgcgctgctggccctcggccccccggcc
cctcccagccctggaccccccgcatccaacgcccccaacgacacggttacccccctccgc
agccgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggctgaggagctggccaagggagacgggtcgtttcag
gccagcctgcgctgcatgctgttggacggcagcctgcacgaagtggccggcctcctctcc
aagtccctgtttggggagcctctgaacggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtagcgagatggccacagaatatacagacgac
aacgaggaagaagtacgggatggatggcagtttcgccccccgcctagaggagtcaccagc
agtgaggagtacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcc
cagtgcacgtcggcccactcccaggaggagctgatggagtggcagaagcgctacgcctcg
cgcctcatccgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggag
gcgctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttg
gacggcgtcagcgtggaacacagctccaacctctccgtaacggtcaccaccaagaaatca
gctcactcctggaccttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgcc
ctgctctacgacgcccaccgaccccacttctccatcacgggcgtgtcggttggcgatgcc
ggcgcccagcggctgcaggcggcggccgagggctgccaggagtggacggcgggcgaggag
gcgctggcggccaacaacggcatggaccactgcgtctacacggtggtggtgggcttcagc
accgagatcttcggcaccttccgccagaccatcgtcttcgactttggctcggagcccgtg
ctgatgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctaatgcaa
gccaggcagcagctcctgatgacggccaagcgctgggacccgtcctgcaagaccatcgtg
gagttcagccccaacgagacggtggacctggaccgcagcctgctggcccgctaccagatc
cccctgtcggccgaccagctcttcacccagtcggtgctggacaagaccctgacccgggac
aactaccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaa
gtcagcaagttcaacatcaaagtcaacctccagctggtcaccagcttcatgctgacgggc
atctctggtggcgccaagtacgcccagaacgggcagctcttcgcccgcttcaagctgacg
gagacgctgtcagaggacacgctggcgggccgccttgtcatgaccaaggtgaactctgtc
ttgctgctgcccctggcccgccaggagtggtgcagccagcccccgggggtcaaggagcgg
gtctacgaggcatgcatcgaggagaagaccaaggactacatcttcctgcggatatgcaag
gactgctgcgaggagctgggcttgatacctgatagggaactgcaggtggagctgcagttt
cagttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaac
ggcatcctgttcccagacaccagccttacccccaccattccctggagccccaacaggtcc
aactcggtcgttgagggaaataatgaaaatcagaagtggcactggctccgtgttccagat
ttgaatttgcctgacatagatccttcaaccgctgttccatggcagtgggacgagcagctg
gacccgcgcctcaacgccaagcagaaggaggccatcctggccatcaccacgcctctaacc
atccccctgccccctgtgctcatcatcgggccctacggcacgggcaagaccttcaccttg
gcacaggccgtcaagcacatcctcaagcaggacgacagcagggtcctcatttgcacccac
tccaacagtgcagctgacctgtacataaaggactaccttcatccatacgtagaagcgggc
aacgcgcacgcaagacctctcagggtatacttcaggaaccgctgggtgaagactgtccac
ccgttggtgcagcagtactgtctgatctctaacacacagtacactttccagatgcccgag
agagaggacatcctccggcaccgcgtggtggtggtcaccctcagcacctcccagtacctc
tgccagctggacctggagccagggctcttctctcacatcctattggacgaggcggcccag
gccatggagtgtgagaccatcatgcctttcgcgctggccagcaaaagcacccgcatcgtg
ctggctggagaccacatgcagctcagtccgtttgtgtacagcgagttttctcgagagcgg
aacctgcatgtgtcgctgttggaccggctgtacgagcactacccagccgagttcccctgc
cgcatcctgctctgtgaaaactaccgctcccacgaagctatcatcagctacacgtcagaa
ctgttctacgatgggaagctgatggccagcgggaagcagccgtctcacaaggacttctac
ccgctgaccttcttcacggcgcgcggcgaggacgtccaggagaagaacagcacggcctac
tacaacaatgcagaggtgtttgagatcgtggagcgggtggaggagatgcgtaagaagtgg
ccggtggcgtggggcaagctggacgagggcagcatcggcgtggtgtcgccctacgccgac
caggtattccgcatccgcgccgagctccgaaagaagaggatgcacgaggtcagcgtggaa
cgggtgctcaacgtccaaggtaagcagttccgggtgctcttcctaagcactgtgcgcaca
cggcacacctgcaagcacaaacagacggccatcaagcggaaggagcagctggtggaggac
tcgacggaggacctggactacggcttcctgtccaactacaagctgctcaacacggctatc
actcgcgcccagtccctggtggccgtggtgggagaccccatagcgctctgttcggtgggc
cgctgcagaaagttctgggagaagttcatctccatctgccacgagaacgccagcctgcac
ggcatcacctttgagcagatcaaggcccagctggaggcccttgagctcaagaagacctac
gtgctcaacccgctggcgcccgagttcatcccccgcgccctgcggccccagccagcccag
cacccccatcatcaccaacaccatcaccaacacccacacccccagggacacacggccatc
aagcagccccagcagcagcaaccgcagcagtctcccccgaaggggaaaggtcaacatgcg
aaccacacggagcacttcccacctgaaggatttgttcaacccaaccccgcggtgttgatg
ggcaaccccatccgggcgttcacgccgcccttagggggcacacctggcggcatgggcaag
tcccccagtcccgtgcagaggatagaccctcacacgggtgccagcatcctctacgtgccc
gccgtctacggaggaaacatggtcatgtccatgccactgccctctgtccccatccagctg
ccgtggcccggctaccagaaccgctttgccatggacccacgcatcatgagccaccaggcg
gccatggcctacaacctgaacctgctgcaggcccagaaccggggctcgcccatcccctac
ggcggagtcacacacccctcccccttgggcatgggccagcagaccagtcccgacaaggag
cttcaggctgattccgtcagaaatggtaaaatggacggttgtgcaaagtccgagcagagt
cggctgcagacaccagagaggaagacctcggagatgaaggacaaacagggagagtgtgat
ccgggcggtggccggggtctggactctcagacggacggactgggcttccccaatgccatg
ctccaccgcaaggacaactcaagccaaagacccctcaattaccacctggcgccccccaac
ccggcctttgccccccatcccgtgggtcgggccttccccccacagtaccccggcgtatcc
aggctcccctttagggtgccgacccagcacccaggtgggggtccggccatgggccagcct
aaccagcatcactcggcccagctatccccagcctacgccagcggcaaccacaacccctcc
ttctttggtggggccatggcctcccacaggggtgtgccggagactgaggaggaggggccg
gaggagattgggaattccatcaggtcccagatgggccaccaggtggggcaccacccggcc
ctgtcgcagcccagccgagttaacagcttcggagaggagaaccaggaaggaggcctggga
gaagggatggactccctaactctggaggccctgagccagcaggcgcggctgggccagtgg
ggtgagcccgggcccttcctccagggcggtgtggccttccctctgccccagcagctggcc
catctggcccagcccggcctagcccgcttcccccctcagctgctggcacgggccaactgg
agaatgagcgccggcatggaggacgaggctggcggaccgcctttcactaggttcccaggc
ctcctaagagagatgcccccccaggatcagcctgatcccagggacccggttgagatgcag
ccccctccccagtcccgcctgctccagtaccgccaggtccagtcccgctcccctggagac
ccctcctccccctcgtctgtaacctccaaccacaccggccccttcccccctggcccctat
cccggccgagaccccaccagccacgagctggagctcctcaataacccgggtctccatcag
cacccggggaaccagctctacaaccccaacgcctacccccagcagctgggccactccact
accccgcccccgcaggtcaagtacctcctccaggaggcccagtggcctcacggcggagct
agcgtggcccagaaccacatgctggcccagggccagggcttcccctatgggctgcccgtc
atggcccaccccagtagacaggagcaggtccacctcatgcagctccaccaccagcagcag
cagcagcaccaacagcagcagcagcagcagcagggtcaaggcccaggccaggagccctac
caccctctctcccccagaacaacaggtgccaccgcccttcacaatgtagaagagtatgaa
cccaggggtcccgggcggcccctctaccagcggcggatctcctccagctacccagacgag
ggatcccccgccaacgctgccgccttggcccagcagcagccacagccctgcccgccagac
ccccaggagcaccctcacacacaccaacaccctcacccccaccaacacccccacgccccc
tacggctaccccccgcccgagctgtggcccggcaacgggggcggccccggcccgttccag
aacattccatgcaacggagccagcacactcattcaacaccgggacctcctagtagcttcc
aaggccctgcggcaggcagcagaggagcagatgaaggctgaagcggcagcagcagtagct
gcggcccagcctcccgcccactccctccagcacctcggacaattcccccctctcatgccc
aacagcaagccacagcagcagcagcagcaggccgccccagagcccggccaaggctctggg
ggcccccaaaaccctggcaaaccccccaccatgtcctacgccagtgccctccgcgcccca
cccaaacccagagctcgccctgaacaggtcaaaaagcacagcgacccactttcccttctc
caagagctgagcataggaagttcaaatggtagcaacggatactattcctattttaaatga
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