KEGG   Oncorhynchus kisutch (coho salmon): 109889112
Entry
109889112         CDS       T09179                                 
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03010  Ribosome
oki04120  Ubiquitin mediated proteolysis
oki04137  Mitophagy - animal
oki04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    109889112
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109889112
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    109889112
   04137 Mitophagy - animal
    109889112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:oki03011]
    109889112
   04121 Ubiquitin system [BR:oki04121]
    109889112
Ribosome [BR:oki03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    109889112
  Archaea
    109889112
Ubiquitin system [BR:oki04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   109889112
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 zf-C4pol OTU1_UBXL Dsc3_N
Other DBs
NCBI-GeneID: 109889112
NCBI-ProteinID: XP_020335898
Ensembl: ENSOKIG00005031780
LinkDB
Position
LG4:16249669..16251241
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKLK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgttgacggggaaaacaatcacccttgaggttgagcccagc
gatactattgaaaatgtcaaggccaagatccaggataaggaaggcattcctcctgatcaa
cagcgtctgatcttcgctggcaaacaacttgaggatggtcgcaccttgtcggactacaac
atccagaaagagtccacccttcatcttgtgctgcgtcttcgtggaggcattatcgagcca
tctttgagacagctggcccagaagtacaactgtgacaaaatgatctgccgcaaatgctac
gctcgcctccatcctcgtgctgtcaactgccgcaagaagaagtgtggacacacaaacaac
ctgcgccccaagaagaagctgaagtaa

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