Oncorhynchus kisutch (coho salmon): 109889117
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Entry
109889117 CDS
T09179
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109889117
09123 Folding, sorting and degradation
03018 RNA degradation
109889117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109889117
03041 Spliceosome [BR:
oki03041
]
109889117
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109889117
mRNA degradation factors
5'-3' decay
Lsm complex
109889117
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109889117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
109889117
NCBI-ProteinID:
XP_020335905
Ensembl:
ENSOKIG00005032321
LinkDB
All DBs
Position
LG4:16335719..16340058
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQEKKPAGGKPQGVKNQH
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacatataacggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgtgggcgaggaggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggaatgccaggagtgggcagaggccagcagcaggagaagaagcctgctggtggt
aaacctcagggagtcaagaaccagcactga
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integrated database retrieval system