KEGG   Oncorhynchus kisutch (coho salmon): 109889117
Entry
109889117         CDS       T09179                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109889117
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109889117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109889117
   03041 Spliceosome [BR:oki03041]
    109889117
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109889117
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109889117
Spliceosome [BR:oki03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109889117
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 109889117
NCBI-ProteinID: XP_020335905
Ensembl: ENSOKIG00005032321
LinkDB
Position
LG4:16335719..16340058
AA seq 149 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQEKKPAGGKPQGVKNQH
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacatataacggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgtgggcgaggaggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggaatgccaggagtgggcagaggccagcagcaggagaagaagcctgctggtggt
aaacctcagggagtcaagaaccagcactga

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