Oncorhynchus kisutch (coho salmon): 109889239
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Entry
109889239 CDS
T09179
Name
(RefSeq) low-density lipoprotein receptor-related protein 5 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04150
mTOR signaling pathway
oki04310
Wnt signaling pathway
oki04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
109889239
04150 mTOR signaling pathway
109889239
09133 Signaling molecules and interaction
04519 Cadherin signaling
109889239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109889239
Membrane trafficking [BR:
oki04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
109889239
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
LRP1-like_beta_prop
Vgb_lyase
EGF_LRP2
SGL
cEGF
EGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
109889239
NCBI-ProteinID:
XP_020336110
Ensembl:
ENSOKIG00005029138
LinkDB
All DBs
Position
LG4:complement(21950996..22027626)
Genome browser
AA seq
1624 aa
AA seq
DB search
MKLKLRAIAMDVFLVELLFYSSLLSVVNGSPLLLFANRRDVRLVDVEMGRPESAVVVSDL
EDAAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSTNSLKEALGTRQTVVVSGLDSPDGLAC
DWLGRKLYWTDSETNRIELANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPR
IERAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEG
TLTHPFALTLSDETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGSDRQPDI
HTPCSDSNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRI
SLDLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTDAQNLVTTEI
NHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVNGYMYW
TDWGEKPKIERANLDGMERLVLLNTSLGWPNGLAIDYEAGKLYWGDAKMDKIEVIDVDGS
NRMTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTNAIREIIIDQLPDLMGLKATR
VTEVSGTNGCVEDNGGCSHLCFHRPQGLRCDCPMGLELLSDMRTCVVPEAFLLFTNRADI
RSISLGTNSNDVAIPLTGVMEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEF
GLDYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALNPANGYM
YWTEWGGKPRIARAHMDGSNIITLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQG
LQREIVADDLPHPFGLTQYRDYIYWTDWNLRSIERADKRSGLNRTMVQGHLEYVMDILVF
HSSRQDGANDCSQNNGNCAHLCLASPSGSQCRCASHYILDSNSRNCSSPSSFLLFSQKAS
ISRMVLGEQSPDIILPIHVLRNVRAISYDPLDHLIYWVDGRQNIRRARDDGTQSSVVVST
TSTHQQQPDKQPHDLSLDTYSRTVYWTCEATNTINLQRLDGDAMGVVLRDEHDKPRAIVV
NAEKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLK
RIESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLIGEKRTRIQGR
IAYLTSIHAVEDMDPTEFASHPCSHDNGGCSHICIAKGDRTPRCSCPMHLVLLPNLLICG
DPPTCSTEQFTCATGDIDCIPMAWRCDGVAECDDNSDEENCPVCSAIQFQCDKGQCVDAQ
LRCNGEPDCADNSDEQDCDTICLPNQFRCNNKQCILKKQQCDSYNDCADNSDELFCEFLT
PPSSDIQSPSHTSTIGPVIGIILSVFVMGGMYFVCQRVVCRRYKGPNGAFPHDYISGTSH
VPLNFIAPSSSQHGTFTGISCGKSMMSSVSLMGSSCSGAPLYDRNHVTGASSSSSSSTKG
TFYPQMLNPPPSPATDRSLYNAEIFYSSNSPSTTRSYRPYLMRGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaagctacgagcaattgcaatggacgtttttctcgtggaattactgttttat
agtagcttgctctctgtagttaatggatcccccttgctgctgtttgccaaccggcgggat
gtgaggctggtggatgtggagatgggaaggccagagtcagcagtggtggtcagtgatctg
gaggatgctgctgctgtggatttcctctactctgaaggactcatcttctggaccgatgtc
agcgaggaggccatcaagcaaacctactacaatcagtccaccaactctctgaaagaggcc
ttggggacaaggcaaacggttgttgtgtcgggtctcgactcccctgacggactagcttgt
gattggctgggccgtaaactatactggaccgactcggagaccaatcgcattgagttagcc
aacctggatggcacctctcgcaaggtgctattctggttggacctggaccagcccagggcc
atcgccctgaacccagcccaccgctatatgtactggacagactggggagaggagcctcgc
atcgagagggcagggatggacggaagcaacaggaagatcatcgtggaggtggacatctat
tggcccaatggcctcaccattgacctggacgaacagaaactgtactgggcagacgccaag
ctgagcttcatacacagagccaacctggacggctcctcacgggagactgtggtggagggc
accctcacccacccgtttgccctcaccctgtcagacgagactctctactggacagactgg
cagacccgctctatccacgcctgcaacaaacacactggagacaagaggagggagatactc
agtggaatctactcccccatggacatccaagtgctgggttcagatagacagccagatatc
cataccccatgcagcgacagcaatggaggctgctcccacctgtgcctgctgtcgcccatg
cagcccttttacagctgtgcatgccccactggagtcaagctcaaggaggatgggaagacc
tgtcgcccaggtgcggagcaggttctactgctggccaggcggactgacctgaggaggatt
tctctggacctcccagatttcactgacatcgttctgcaagtggacgacatccgccatgcc
atcgccatcgactatgaccctgtggatggatatgtgtactggacagacgacgaggttaaa
gccatccgccgctcccgcattgacgggaccgatgcccagaacctggtcaccacggagatc
aaccacccagacggcattgcggtggattgggtggcccggaacctttactggacggatacg
ggtactgaccgtattgaggttacaaggctgaacggaacctcgcgccgcattctgatctca
gagaacctggatgaaccaagggccattgtgctggaccctgtcaatggttacatgtactgg
acagactggggggagaagcctaaaatagagcgtgctaacctggatggaatggaacgtctc
gtgctgctcaatacctcgctgggttggcccaacggtttagccatcgactatgaagcagga
aaactatactggggtgatgccaagatggacaaaattgaagtgattgatgtggacggctcc
aataggatgaccctactggaggacaagctaccccacatctttggcttcacgctgctgggc
gactacatctactggacggactggcagaggaggagcatcgagagggtccacaagaccaac
gccatccgagagatcatcattgaccagctgcctgatctcatgggactcaaagccaccaga
gtcactgaggtctccggcacaaatggctgtgtggaggataatggcggctgcagccacctg
tgtttccaccggccccagggcctgcgctgtgactgtcccatgggcctggagctcctcagt
gacatgaggacatgcgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatc
cgctccatctccctcgggaccaactctaacgacgttgccatccccctcaccggggtcatg
gaggcctccgccctcgactttgacgtctccgagaacaggatctactggactgacgtcagc
accaagaccatcagcagggccttcatgaacggcagctctgtggagcatgtgatcgagttt
gggctggactacccagaaggcatggcagtagactggatgggcaggaacgtgtactgggcc
gacacagggaccaaccgcatagaggtggcccggctggatggacaataccgacaggtcctg
gtgtgtaaggacctggacaaccctcgctccctggcccttaaccctgccaatggctacatg
tattggacagagtggggaggcaagcccaggatcgccagggcccacatggacggcagcaac
ataattaccctagtggacaaagtgggcagagccaacggtctcaccattgactacatcgac
cagagactctactggaccgacctggacacctgtatgatagagtcaaccaacatgcaaggt
ctgcagagggagatagtggctgacgacctccctcatccgttcggtctgacccagtaccgg
gactacatctactggacagactggaacctgcgcagcatcgagcgggccgacaagcgctct
gggctgaaccgcaccatggtccagggacacctggagtacgtcatggacatcctggtcttc
cactcctctcgccaggacggtgccaatgactgctcccagaacaacggcaactgtgcccac
ctgtgcctggcgtcgccctccggctcccagtgccgctgtgcctcccactacatcctggac
tcaaacagcaggaactgcagctccccctcgagcttcctcctgttcagccagaaggcctca
atcagccgcatggttctgggtgagcagagccccgacatcatccttcccatccacgtcctc
cgcaacgtccgggccatcagctacgaccccctagaccacctgatctactgggtggacggg
cggcagaacatcaggagggcccgcgacgatggcacacagtcgtcagtggtggtgtcaacc
acttccacccaccagcagcagcctgacaaacagccccacgacctgagcctggacacctac
agccgtactgtctactggacttgtgaggccaccaataccatcaacctccagcgcctggac
ggagatgccatgggcgtggtgctgcgagatgaacatgacaaacccagagccattgtagtc
aacgccgaaaaagggtatatgtatttcacgaccatgcaggatcgctctgctaagatcgag
ggagcgtctctggatgggacagagcgggagtctttgttcaccacgggtctgatccggcct
gtagccctggccctggacaacaagctggggaaactcttctgggtggacgctgacttgaaa
cgcattgagagcagtgacctcactggagccaatcggatcgtcctccaggactctaacatc
ctgcagcccatgggtctgacagtgctgggggagcacctgtactggatcgacagacagcag
cagatgatcgagagggtggacaagctgattggggagaagaggacccgtatccagggccgc
attgcctacctcaccagcattcacgctgtggaagacatggaccctacagagtttgcttct
catccctgttcccatgacaacggaggctgctcacacatctgcattgccaaaggagaccgg
acacctcgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcatctgtgga
gacccacccacctgttccacagagcagttcacctgtgccacgggcgacattgactgcatc
cccatggcatggcgctgtgacggcgttgctgagtgtgatgacaacagtgacgaggagaac
tgccccgtgtgctcggcaatccaattccagtgtgacaagggccagtgtgtggatgctcag
ctacgctgcaacggagagccagactgcgcagacaactccgatgaacaggactgtgacacc
atatgcctgcccaaccagttccgctgcaacaacaagcagtgcatcctgaagaaacagcag
tgtgactcctacaatgactgtgctgacaactctgacgagctcttctgtgaattcctcacc
cccccgtcaagcgacattcaatcaccatctcacaccagcaccatcggcccagtcattggc
atcatcctgtcagtgtttgtgatgggagggatgtactttgtgtgccagcgggtggtgtgc
cgccgttacaaaggtcccaacggagccttcccccacgattacatcagtggcacctcacac
gtacccctcaacttcatcgcacccagcagctcacagcacggaaccttcacaggtatctcg
tgtgggaagtctatgatgagttctgtcagtctgatggggagcagctgtagtggggcgcca
ctctatgacaggaaccatgtaacaggggcctcctccagcagctcctccagcactaaggga
accttttatccacagatgctcaacccgcctccctctccagccacggatcgctccctgtat
aatgcagagatcttctactcctctaacagtccctccaccaccaggtcttacaggccttat
ctaatgcgcggtgtggcaccccccaccaccccatgcagcactgacgtctgtgacagcgac
tacaccacaagtcgttggaagagcaacaagtactacatggacctaaactcagactctgac
ccttaccctcctccccccactccccggagccaatacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttactttcacctctgtcccccacccccgtcaccatgc
actgactcttcatga
DBGET
integrated database retrieval system
