Oncorhynchus kisutch (coho salmon): 109889334
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Entry
109889334 CDS
T09179
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109889334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109889334
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109889334
mRNA degradation factors
5'-3' decay
Decapping complex
109889334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
109889334
NCBI-ProteinID:
XP_020336281
Ensembl:
ENSOKIG00005002249
LinkDB
All DBs
Position
LG4:27705563..27732883
Genome browser
AA seq
1406 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASQCESQRKTSFNGELNGLLPGAGSRSTMD
ESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLPPDEESESMTAEGIQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHS
NDGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPALPAPADFMSPAGAAAMPKLMTPD
AFMTPSASVPASPGSSASSLKIVTAMTSNSDSGARGGEELTQNPKMSVESSSSLTLSAST
SSPRASSLFISGLGDNMPVLPSPNLPLSLDPQAIEPMLIQHASPTLARSPDVISSASTAM
SQDIPEIASETLQRSLGVVSGAESRDPLPALHTDSMASAASALHHLSPRNRNNSDHSHLT
LELGAGAVEAEQRLSNTPSLLENALSQENAAAAAASCSDNNTSHPWPAAPDITRETRNSL
RDNGLGDCLREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGA
RSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEHHNHQHQINPEVQEELLM
LLRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERILAEG
QNRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKSVPPTIIKSLEPVTAQMNNTIAA
KLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQS
MFQQINDSFKQGTHEYIQQLETHVKSRKQHEQEGQDPMIGQLQQMIDTFQNSTDQLATTV
TASVCSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSAAGT
PVPTPLLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQHPCP
LIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKLFQF
LQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtagacgcatctcaatgtgagagccaaagaaaaaca
tctttcaatggcgaattgaatggacttctgccgggagctggcagcaggtcaacgatggat
gaatccacaggccctaattcagagaacatgaatacccaagagtgccagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatccaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcatatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgccgagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggactccaccctgctgggatgtgttgatgaagccggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcctttcatcctagag
gacaatgaagagaaccctgaggatgctagccagaccctggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggatggcgttataaccataaaaggacatacagagcgtataagtgaaggt
gccctgtctccagatggcacagtcttggccacagccagtcatgatggttatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccggatgttccattctggcgctttctgattactggagctgat
cagaaccaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcagg
ttctctccagacccgttcaactcctcagtcctgcccagtctaaaggccagcctggacctc
tctgcagaatgcctcatcctcagcgacgtgcagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtctgagttcctgctcaca
caccctgtactcagctttggtgttcaggacgtcagccgcagccgcctgcgccacacagag
gtcctccccccagatgaggagagcgagagtatgactgcagagggcatccagggcccaatg
gaatccagagctgggatccaaataaagctatactgtgtccacacaaagtctcttcaagat
gtgcagatctggttccagccaaaccttgggtctggctcgtccttatttctgcctcactca
aacgatggctttggtttttcggatcacttgacagacatgagcatggaaggtttgagctct
gataaggagtccggatgtggctcccaaaatgatctccggaagattcccgcccttcctgct
cctgctgacttcatgtcccccgctggcgccgccgctatgcccaagctcatgacccctgac
gccttcatgacccccagtgcttcagtcccagcctccccaggcagcagtgccagcagcctg
aaaattgtgacagccatgaccagcaactctgacagtggcgccaggggaggagaggagctg
acccagaaccccaagatgtctgtggagagcagtagcagtctgactctcagtgcgagcacc
agcagccccagagccagctcccttttcatctcaggcctaggggacaacatgccggtgctt
ccctctccaaacctgcccctctcgctggacccacaggccattgagcctatgctgattcag
catgcctctcccaccctggctcgctctccagacgtcatctcatctgcctccacggccatg
tcccaggacatccctgagatcgcctctgagacgctgcagcgaagcctgggggttgtgtct
ggagctgaatcccgagaccctctcccagccctccacacagacagcatggcttctgcagcc
tcagcccttcaccacctctctccacggaaccggaacaactctgaccacagccacctgacc
ctggagctgggtgctggagcagtggaggcggagcagaggctcagtaacactccttcacta
ctggagaatgccctgtcacaggagaatgctgcagccgccgctgcctcctgctctgacaac
aacacaagccacccctggcctgcagctcccgacatcacacgggaaacgcgcaacagcctg
cgggacaacggcctaggagactgcttaagggaggaaatgaaggacagacacatgtcctct
ccataccacagacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaa
caaagtgaccatgatgacgaggtggccagtctagcgtcgtcctctgggaactgtggagcc
aggtcgtctcaaagactgccagtgaaggagtggaagagctctcccagaggctcccctaaa
ctcaagaggaagagtaaaaaagatgacggggatgcatctcatgcctctcagtccaggcag
cctgagcatcataaccatcaacatcagattaaccctgaggtgcaggaagagctgctgatg
ctgctgcgtaaccagcagagggagctagcggatctccgtcagagtcagctagagctgctg
cagagagtgacgggccacatggacgccgtgcagagctctgtcatagcccatgtggagcac
gtcatggtcagccagcaggagcatgaacagaggagaatggagagaatcctagcagaggga
cagaaccgtaaccagcaactccaggaacatctctcccagcagctggctcaaactctcaac
aacaccctgtgtaaccgtctggacaagactctccgagaggagatgaagaaatctgttcct
cccactattatcaagagtctggagcctgttactgcccagatgaataacaccatcgctgct
aagctgacggctgtggaggcagcactgaaggagaacgttagcaaagtcgtcaagtcaaag
aacaccacagatgcaatcggccgggcagctgctgaggcaatgcaggggcctatccaggct
gcctacaaggatgcgttccagagcattgtgctgcctgtgtttgagaggggctgccagtct
atgttccagcagatcaatgacagcttcaagcagggcacccatgagtatatccagcaactg
gagactcatgtgaagagcaggaagcagcatgagcaggagggccaggaccctatgattggc
cagctgcagcagatgattgacactttccagaattctacggatcagctggccaccactgtc
acagcaagtgtctgctcggaggtccagcaccagctcaacatgacggtgggaaacctgcag
gaatcgatcctgacccaggtgcagcgcatagtgaagggtgaggtgagcatggccatgaag
gagcagcaggcagctgtgacctccagcatcatgcaggccatgcgctctgctgcaggcacg
cccgtccctaccccactcctcgactaccaggcccagcaggccaacatattgcagctgctg
cagcagggacagctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctg
gttctgtatgtgtgcgagaccattgactcccagcaggtgtttggccagcatccctgcccc
ctaatccagccagtgctgctgtccctcatacagcagctgtccactaacctggccacacgc
tctgagctcaagatcagttacttggaggatgctgtgatgaacctggaccatggtgatccg
gtgacgagagaccacatgagtactgtgctgtcccaggtccgacagaaactgttccagttc
ctgcagcaggacccacacagtcctcttagcaagagagcccggcgcctggtgatgatgctt
cagggccttgtcaatcactag
DBGET
integrated database retrieval system
