KEGG   Oncorhynchus kisutch (coho salmon): 109889366
Entry
109889366         CDS       T09179                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03013  Nucleocytoplasmic transport
oki03015  mRNA surveillance pathway
oki03040  Spliceosome
oki05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109889366
  09122 Translation
   03013 Nucleocytoplasmic transport
    109889366
   03015 mRNA surveillance pathway
    109889366
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109889366
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109889366
   03041 Spliceosome [BR:oki03041]
    109889366
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109889366
    TREX complex
     109889366
Spliceosome [BR:oki03041]
 Complex C
  Other components
   EJC/TREX
    109889366
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109889366
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_10
Other DBs
NCBI-GeneID: 109889366
NCBI-ProteinID: XP_020336350
Ensembl: ENSOKIG00005002575
LinkDB
Position
LG1:65329968..65333334
AA seq 272 aa
MADKMDMSLDDIIQQSKKGGGGRGNRGGRSRGSSGRGGSGGRPGGAASGGRTGGSGPMRS
RQNFSGDRSDSRPTPYSRPRELPDKWQHDMFEGGFGSNAGGGGGAGGGGVETGGKLLVSN
LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSQGTADVHFERRADALKAMKQYNNVPLD
GRAMSIQHVTSQIRDDNQRRPSQSSNGGSGGFNRDRIGRPNFSDRRGGGDRRAGRGSRGR
GRGGRGGGKPQQLSAEELDAQLDAYNAKMETS
NT seq 819 nt   +upstreamnt  +downstreamnt
atggctgataagatggatatgtctttggatgacattattcaacaaagtaagaaaggcgga
ggtggccgcggaaatcgaggaggccgcagccgcggatcatcgggtcgaggtgggagtgga
ggccgacccggtggagctgcctctggaggccggaccggcggatccgggcccatgaggagt
cgacagaacttcagtggagacagaagcgacagcaggcccacgccatacagcaggcccaga
gagctgccggacaaatggcaacacgacatgttcgaaggtggcttcggcagtaatgctggc
ggtggtgggggagcaggaggtggcggtgtggagactggtggcaagctccttgtctcaaac
cttgacttcggtgtctctgacgctgatatccaggagttgtttgcggaattcggtacgttg
aagaaagcggctgtgcactatgaccggtctggccgcagccagggaaccgctgacgtccac
tttgagaggagggctgatgcactcaaagccatgaaacagtacaacaatgtaccactcgat
ggccgcgccatgagcattcagcacgtcacgtcacaaattcgagacgataaccagagacga
ccatcacagagttcaaacggaggcagtggtggattcaacagagacagaattggacgcccc
aatttctcagacagacggggaggtggagacaggcgggccggcagaggctccagggggagg
ggtagaggtggacgtggtggaggcaaaccgcagcagttgtctgctgaagagctggatgcc
cagttggatgcgtacaatgctaagatggagaccagttag

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