Oncorhynchus kisutch (coho salmon): 109889450
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Entry
109889450 CDS
T09179
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oki03009
]
109889450
03036 Chromosome and associated proteins [BR:
oki03036
]
109889450
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109889450
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109889450
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
109889450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Gly_acyl_tr_C
Cas3-like_C_2
ERCC3_RAD25_C
LYRIC
Motif
Other DBs
NCBI-GeneID:
109889450
NCBI-ProteinID:
XP_020336470
Ensembl:
ENSOKIG00005050856
UniProt:
A0A8C7LWP5
LinkDB
All DBs
Position
LG25:34359301..34366696
Genome browser
AA seq
783 aa
AA seq
DB search
MLVKALAQHHTVVSFLSVRVPVGLACVHSKGKQPGKMPSKIIFETEDIGMEGEMDISAGS
TTPKKIKEKKTKEGKKIKKQKTVVEEEPDCEPPAPKKKKKKNKEKEDKTNGGAEVDVNSN
AEESPLKDNTFHSNEESADNDKATEKKKKKKKKEKVIVDGVLPETPTLIAQTNGHTAATT
PAQSSEDSDSGKETETPEQKEGAFSNFRISPNTIKLLQARGISYLFDIQTQTFNSVYEGK
DVIGQARTGTGKTLAFAIPLIEKLQNDPDDKKRGRAPKILCLAPTRELAIQVSKDFKDMT
KKLSVTCFYGGSSYNPQLDAIRSGIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQM
LDMGFAEQVEEILSASYQKDSETNPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKT
QKAATTVEHLAIACHWSQRAAVIGDVVQVYNGSHGRTIVFCETKKDANELSMNASIKQSS
QSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHR
SGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIIKSSSKDAVRFLD
SVPPQAIEYFRVSATKLIEERGAVEALSAALAHISGATALEQRSLLNSDTGYTTMTMNCS
QELQNIGSAWRGLKEQLGEEIDNMIRGMTFLKGKMGVCFDVPADKVKEYQDAWQDGRRWQ
LSIATELPELEEKPRMGGDRGYGRSFGGQGGGRGFRNGGGGGGGGNWRGGGSHKRSFSSA
FDY
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtaaaagctctagcgcaacaccacacagtcgtgtcgttcctttctgtacgcgtg
ccggtggggttagcctgtgtccactctaagggaaaacaaccggggaagatgccgtcaaag
attatttttgaaaccgaagacatcgggatggaaggtgaaatggacattagtgcgggcagt
acgacacccaaaaaaataaaggagaagaagaccaaggagggaaagaaaatcaagaaacag
aaaacggttgttgaagaggaacctgactgtgaacctcctgctcccaagaagaagaagaag
aagaataaggaaaaagaggacaaaactaacgggggcgcagaagttgatgttaacagcaac
gcagaagaatcacctttgaaggacaacacatttcattccaatgaggagtctgcagacaat
gacaaagcaaccgagaagaagaagaagaagaagaaaaaggaaaaggtcatcgtcgacgga
gtgttgcctgagactcccacgctgattgcacaaactaatgggcataccgcggcgacaact
ccagcacaatcaagcgaggactccgacagtggaaaagaaaccgagacgccagaacagaaa
gagggagccttctctaacttcagaatctcccccaacaccattaaactacttcaagcaaga
ggcatatcttacctctttgacatccaaacacaaaccttcaattctgtgtacgagggaaag
gatgtgattggccaggcaagaacaggcactgggaaaactttagcttttgccattccgctg
attgagaaactccaaaatgacccagatgacaagaagaggggcagagccccaaagattttg
tgccttgctccaaccagagaattggctattcaagtatccaaggatttcaaggacatgaca
aagaaactgtctgttacttgtttctatggtgggagctcctacaacccccaacttgatgcg
atccgcagtggcatcgatatcctggtgggaactccaggtcgtatcaaggaccatctacag
aataacaaactggacctgtctcaattgaagcacgttgtattggatgaagtggaccaaatg
cttgatatgggctttgcagaacaggtggaggagatactgtctgcgtcttaccaaaaagac
tctgagaccaacccccagactctgctcttctctgccacatgcccatcatgggtgtatgat
gtggcaaagaggtacatgaggccaacctatgagcatgtggacctcattggcaaaaagacc
cagaaagctgccaccacagtagagcaccttgccatagcgtgtcactggtcccagagggct
gcagtcattggggatgtggtgcaggtttacaacgggagccacggccgcaccatcgtcttc
tgtgagaccaagaaggatgccaacgagctgtcaatgaatgcctccataaaacagagttcc
cagtcacttcatggggacattcctcagaagcagagggagatcacactgaaaggcttcaga
agtggcaccttcgaggtcctagtggccaccaacgttgctgcccgcgggttggacatccca
gaggtagacctggttgtgcagtgctcacccccaaaggatgtggagtcctacattcaccgg
tcaggtcgaactggtcgggctggcaggactggcgtctgcatctgtttctaccaacgcaaa
gaggaagaccagctccgatatgtagagcagaaagcaggcattacatttaagcgagttgga
gtgcccacggccaatgacatcatcaaatcgtccagtaaagacgcagtgaggtttttagac
tctgtgcctccccaagccattgagtatttccgcgtgtctgctaccaagctgattgaggag
cgtggggccgtggaggccctgtctgccgccctggcacacatatcaggagccactgccttg
gagcagaggtccctcctaaactctgacacgggctacaccacaatgacaatgaactgctcc
caggagctgcaaaacattggctccgcctggcgtggtctgaaggagcaactgggagaggag
attgacaacatgatccgggggatgaccttcctcaagggcaaaatgggagtctgttttgat
gtcccggctgacaaggtaaaggagtaccaggatgcctggcaggatggtagacgttggcag
ctgtcaatcgccacagagcttcctgagctggaggagaaaccgcgcatgggtggtgaccgt
ggatatggacgttccttcggaggacagggaggtggccgtggcttcagaaacggaggagga
ggcggcggtggcggcaactggagaggtggaggcagtcataaacgcagcttcagcagtgcg
tttgattattaa
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