Oncorhynchus kisutch (coho salmon): 109889570
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Entry
109889570 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109889570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109889570
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109889570
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109889570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
109889570
NCBI-ProteinID:
XP_020336680
Ensembl:
ENSOKIG00005043098
LinkDB
All DBs
Position
LG4:43959403..43977398
Genome browser
AA seq
2424 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGINQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPLHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAQAQAQSQPPKAPQPGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFR
PQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLE
EQLSAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPT
PQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIK
IAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFA
AALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHAR
QEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGF
LAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSR
DGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRC
LIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDE
RSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMH
SGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDD
LITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEA
TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINF
QTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHN
KGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF
AEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKL
FQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgttcactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gctgaccttggcattaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttttgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagccttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatgggatccccctacagtccatctctgctcccggcagtggcatttggagt
gatggaaaggacaagagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctatgagctcgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggtatggaggtgttccctgtcgacctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccattaaacactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcctggcacaccttgcgccacgagctc
atctccaccctcatgcccatcttcctgggcaaccaccccaactccgccataatcttgcac
tacgcgtggcacggacagggccagtccccctctatccgccagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcatctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagccattcatccaggcatgtgtaacgttc
ctgaagaggcgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaa
agcgcacagctccccccggaaacgatggctaccatgctgggctgtctgcagtcctgtgcc
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagcagcctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcgctgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccgtttggggggattggaagcctc
tcttcacagctaggtaacacaggtcctctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagagtaagatgaaggcctctgacttatctcaggtgtggcccgaggct
aaccagcactttagtaaggagattgacgatgaggctaacagttacttccagcgcatctac
aaccaccctccgcaccccaccatgtctgtggatgaggtgctggagatgttgcagaggttc
aaggactccaccatcaagcgagagcgggaggtctttaactgtatgctgaggaacttgttt
gaggagtaccgcttcttcccccagtaccccgacaaggagctgcacatcaccgcctgcctg
ttcggggggatcatcgagaagggtcttgtcacctacatggcccttggactggccctcaga
tatgtccttgaagccttaaggaagccatttggatccaaaatgtattactttggaatcgct
gctctagatagattcaaaaataggctgaaggactatccccaatattgtcagcacttggcc
tcgatcggccactttctgcaattcccccttcatttgcaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgga
agcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccccagcctgga
cagcccagcaccctggtcaccacagctactgccaccaccactgtcgccaaaaccactacc
atcacccgacctacccctggcagcttcaagaaggatgtgccgccttccatcaacaccaca
aacattgacactctgctagtagcaacagaccaaactgagaggattgtggaacccccagag
aatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgacacag
aaggtcgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtttcccagtat
ctggtcatgaagagggtcagcatcgagcccaacttccacagcctatattccaactttcta
gacaccctgaagaaccctgagtttgtcaaaatggtcctgaatgaaacttacagaaacatc
aaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactgaag
aatttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacg
gatttggaggtgaaatccctcttgttggaagcctatgtcaaggggcagcaggagctactc
tatgtggtcccgtttgtggccaaagtcctggaatccagtttgcgtagcgtgatcttccga
cctcagaatccctggaccatggccatcatgaatgttctggcagagttgcatacggaacat
gatctaaagctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactggac
atcaacgacctgaagcctggcaccctgctgaaagacaaagacaagttgaagagtctggag
gagcagctctctgcaccaaagaaagaggccaagccccctgaagaaatgatccctattgtt
agcacaggtatccagcactttcaaactgggatgccccttgtcggagactttcttccattt
gcagctgcaccatccactcctgccccaaccaccacttgctcagctactgggccccctacc
ccgcagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatc
aatatcaacatcaacatccccttgcttcaagcccaccctcagctcaagcagtgtgtgaga
cagtccattgagcgggccgtgcaagagcttgtccaccccgtagtggaccgatccatcaag
atcgccatgaccacctgcgagcagatcgtcaggaaggactttgctctggactcggaggag
tcgcgcatgcgtgtggcagctcatcatatgatgcgcaacctgaccgccggcatggccatg
atcacctgccgggagcccctgctcatgagcatcgccaccaacctgaagaacagctttgcc
gctgccctcagggcccccaccccccagcagagagagatgatggaggaagctgctgccagg
gttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcagtggagaag
gctggcccagagatggacaagaggctggcgacggagtttgagctgaggaagcatgcccgt
caggagggccgtcgctactgtgaccccgttgtgctgacctaccaggctgagcgcatgcca
gagcagatcagactcaaggttggaggcgtagaccccaaacagctggcggtgtatgaggag
tttgcccggaatgttccaggcttcctacccagcaatgacctgtctcagcccacaggattc
cttgcccagcccatgaagcaacaggcatgggccacggacgacgtggctcagatctatgac
aagtgcatggcagacctggagcagcacctccacgccatccctccagcgctggccatgaac
cctcagacccaggctttgcgcagcctactggaggctgtggccctagccaggaactcccgg
gacggcattgccgctctgggcctgctgcagaaggctgtggagggtctgctggatgctacc
agtggtgccgatgctgacttgcttctgcgatacagagagtgccacctgctggtgctcaaa
gccctccaggacggccgggcatacgggccactgtggtgcaacaagcagattaccaggtgc
ctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctgctgatcaga
aaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatggagaatggg
ctgcactacatggcggtggcgtttgccatgcagctggtgaagctgctgttggtggatgag
cgcagtgtgagccacattactgaggcagacttgttccacactatcgagactctgatgcga
accagcgcccactccagggccaacgcacctgaggggcttcctcagctgatggatgtggtc
cgttccaactacgaggccatgatcgaccgggcccacggaggacccaactttatgatgcac
tctggcatctcccaggcatccgagtacgacgacccgcctggcctgagggagaaggctgag
tacctgctgagggaatgggtcaacctgtaccactctgcagccgccggccgggacagcacc
aaggccttctctgcctttgtgggccagatgcaccagcagggcattctgaagaccgatgac
ctgatcactcgtttcttccggctgtgcacggagatgtgtgtggagatcagctaccgcgcc
caggccgagcagcagcacaaccccgcagccagcgccgccatcatcagggccaagtgttac
cataacctggatgcctttgtgcgcctcattgccctgctggtcaagcactccggagaggcc
accaacactgtcaccaagatcaacctgctcaacaaggttctaggtattgtggttggagtg
ttgatccaggaccatgatgtgagacagactgagttccagcagttgccttaccaccgcatc
ttcatcatgctgttgctcgagctcaatgcccccgagcacgtgctggagaccatcaacttc
cagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccctggc
tttgtttacgcttggctggagttgatctctcaccgtatcttcatcgccaggatgctggcg
cacaccccacagcagaagggttggcccatgtatgcccaacttctcattgatctgttcaag
tacctggcgcccttcctgaggaatgttgagcttaacaaacctatgcaaatcctctacaag
ggtaccctgcgtgtccttctggtcctactgcatgacttcccagagttcctatgtgactac
cactacggcttctgcgacgtcatcccacccaactgcatccagctccgcaacctgattctg
agtgccttcccacgcaacatgaggcttccagaccccttcactcccaatctgaaggttgac
atgctcagcgagatcaacatcgcgccgcgcatcctcacaaacttcaccggagtgatgccc
tctcagttcaagaaggatctggactcgtacctgaagacacgctcccccgtcaccttcctc
tctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttg
cagcacaacgacacatctttagaacaggtgtcaaatgagccaggcaaccgttacaacatc
cagctgatcaacgctctggtgctgtatgtgggaacccaggccatcgcacacatccacaac
aagggcagcaccccctccatgagcaccatcactcactcagcccacatggacatcttccag
aacctggctgtggacctggacactgaggggcgttatctcttcctgaatgccatcgccaat
cagctgcgctacccaaacagccacacccattacttcagctgcaccatgctgtacctgttt
gctgaggccaacactgaggcaatccaggagcagattaccagggttcttctggagaggctg
attgtgaacaggcctcatccctggggactgctcatcaccttcatcgagctcatcaagaat
cccgccttcaagttctggagccacgactttgtacactgtgccccggagatcgagaagttg
ttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggc
actggtgccagttag
DBGET
integrated database retrieval system
