Oncorhynchus kisutch (coho salmon): 109889611
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Entry
109889611 CDS
T09179
Name
(RefSeq) terminal nucleotidyltransferase 4B-like
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109889611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109889611
03016 Transfer RNA biogenesis [BR:
oki03016
]
109889611
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
109889611
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109889611
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109889611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
Motif
Other DBs
NCBI-GeneID:
109889611
NCBI-ProteinID:
XP_020336762
Ensembl:
ENSOKIG00005011314
LinkDB
All DBs
Position
LG4:complement(46967130..47017175)
Genome browser
AA seq
686 aa
AA seq
DB search
MDPRIAWFQPEQLGPANSAWMNIWETTQGLGNLSLSNHNNHGSAVWNTPTTKTSPSTTVS
VNWGTGNVIQNGVPDAVTSSSETRMQGTINPKGDNEIEHKFDLLEANINQHPAGRGSSGP
WVVGGTAFGSWRERERECGLGNRRRRDNRASTFGFNRSLLSIGSNSAVDDAGCRGVGYTG
TPWKTRNYSAGILGLHEEIQDFYAYMSPRPEEERMRREVVERIERVIKDLWPTADVQVFG
SFSTGLYLPTSDIDLVVFGKFREGDSLPLWRLEEALRKHKVVEENSVKVLDKATVPIIKL
TDSLTEVKVDISFNMKNAVKAAALIKDYKKKYPVLPYLVLVLKQFLLQRDMNEVFTGGIS
SYCLFLIAVSFLQLHSREDACSPNANTGVLLIEFFELYGRHFNYLKTGIRIKDGGCYLSK
DEVQKSMLDGYRPSLLYIEDPLQPGNDVGRSSYGAMQVKQVFDYAYMVLSHAVSPIAKYY
PNNHSESILGRIIRVTQEVAEYRDWITMKWADLSLNSLTLNGNDVTLLVEPQQTYECNNN
LSEEGAESPSSSSPPPSSPSSSSSSSSPQSSSASSSDADSDGSPCKTVLPRGRRGLSAHR
AAPLGLTNHRATSSSSGSHVSHSNKSTVDRESLTSRQNSHANTQPSTETGQSSCRNHQGS
RRSCTGRRKKPQHQRKPAPAVEDLCR
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatccaagaatcgcctggtttcagccagaacagctcggccctgccaatagcgcgtgg
atgaatatttgggaaacgacacaaggtctgggcaatttgagtttgagtaatcataacaac
cacggctctgctgtgtggaacacgcccaccaccaagacgagccctagtacaacggtatcc
gtgaactggggcacgggcaacgtgattcagaacggagtccccgacgctgtcacgagcagc
agtgagacgaggatgcaagggacgataaatccaaaaggcgataatgaaatagaacataaa
ttcgacctattggaagcaaatatcaaccagcatcctgcggggaggggtagtagtggacct
tgggtagtgggtggcactgcgttcggtagctggagagaacgagagagagaatgtggactt
gggaacagacggagaagagacaaccgagcgagcactttcggatttaaccgcagtttattg
agtattggcagtaactctgcagtggacgacgctgggtgccgtggagttggttacacaggc
acgccttggaaaaccaggaactactctgcagggattttggggctccatgaggagatccag
gatttctatgcctacatgtctccacggccggaggaggagaggatgaggagggaggtggtg
gagaggatagagcgggttattaaggacctttggcccactgctgacgttcaggtatttggg
agtttcagcacaggtctctatctacctaccagtgacattgacctggtggtgtttgggaag
ttcagggaaggagacagcctccctctgtggaggttagaagaggccctgaggaaacacaaa
gtggtggaggagaattctgtcaaagtgctggacaaggccacggtgccaatcatcaaattg
acagactctctcacggaggtcaaagttgacatcagtttcaacatgaagaatgctgtcaaa
gctgctgccctcattaaagattataaaaagaaatatcctgtgcttccatacctggtgctg
gtcctgaaacagttcttattacaaagagacatgaatgaagtgtttacaggaggaatcagc
tcctactgcctcttcctcatcgctgtcagcttcttacagctccatagcagagaggacgcc
tgcagtcccaacgccaacactggcgtcctgctcatagagttctttgagctgtacggccgc
cattttaactacctgaagacggggatccggatcaaagacgggggctgctacctctccaaa
gacgaggtccagaagagcatgctggatggatacaggccatccctgctctacatcgaggat
ccactgcagccaggtaatgatgtgggccgtagctcgtacggggccatgcaggtgaagcag
gtgtttgactatgcctacatggtgctgagccacgctgtgtcgcccatcgccaagtactac
cccaacaaccacagcgagagtatactgggcagaataatccgggtgactcaggaagtggca
gaatacagggactggatcaccatgaagtgggctgatctatcactgaactccctgacctta
aacggaaatgatgtcacgttgctggtggagcctcagcagacgtacgaatgcaacaataat
ctctctgaggaaggggcggaatcaccaagctcctcctctcctcctccttcctctccatcc
tcctcttcatcatcctcctcgccgcagtcttcatcagctagctccagcgatgctgattcg
gacggaagcccctgtaaaacggtgttgccgcgtggcaggcggggcttatccgcacacaga
gctgcccccctaggattgaccaatcacagggctacaagttcctcttccggaagccacgtg
agccactcgaacaagagcacggtggacagagaaagtttgacgtctcgtcagaacagccat
gccaacacacagccaagcacagaaacaggacagtcgtcatgcaggaaccaccaaggcagc
aggcggagctgtacgggcaggaggaagaagcctcagcaccaacgcaaacctgcgcctgcg
gtggaggacctctgtagataa
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