Oncorhynchus kisutch (coho salmon): 109889650
Help
Entry
109889650 CDS
T09179
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109889650
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109889650
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
109889650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
109889650
NCBI-ProteinID:
XP_020336824
Ensembl:
ENSOKIG00005025425
LinkDB
All DBs
Position
LG4:complement(50856196..51056900)
Genome browser
AA seq
915 aa
AA seq
DB search
MDNGLCMVNDDSNFDHRDVGVCKKGCRLLLQTDIAQGDHCCLDALRMLNDALQERSVTLE
HEARMQRLRWVRREQSLLAQVSSLQSEAQLTALRYQRKLHQYMLNINNIAKQVIGYYKSD
SVASGVCLSQLSEQGPTDALDELQDQEEHGLVPEVNGKDLSKASHDEAVEAFRSAKEPIV
VQVLRRNTAGRGSHVSSTQEVDVVDMCTQTDITFEHIMALAKLRATTPPVPDICPFLLSD
SCHSLHTMEQDYYEGRADGGRTEEFEYEEVELCRLNSQEKLGLTLCYRTDEEEDMAIYVS
EVGPNSIAARDGRIREGDHILQINGQDVQDREEAVAVLSSEDTRNIILLVARPEMQLEEA
WLDDEHSEFLEQLKMEMLEEQQREEMELEALQEEQEQPRGTQEDDITATCSSLTQDKDSE
LGMSDHNALLTHIQRRLSQCLRDRQDTGHHRLDEEEEEEELEVEEGDRFQQLLELKCQIR
NSGEYDLFYSRHSTIECSLGEPAGGVQHELRMLNEELCSIELECQNIMQAHKLRKGPGGT
QRDQVQQVSTITGHPVPTDQSFLRGSRDSPIRGKLADINKRQEKPEKSDKDSSSAYNTAE
SSRSTPLAMDRSPEHSLQRRMVTITNQRNLRSSLASLHATASPSHSPSPTQRSLHRTPIP
GKASSPDHSPNRYESDQTAPADDERSGNGKVKPQHPPRASQIPYLSPSRSSQHRQPNTNI
PAHYQSYMQLIQQRSAVEYAQSQLSLLSVVKEPQLIPASEPKMEWKVKIRSDGTRYITKR
PIRDKILRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRRRREFM
QRSRLESLRESPQSSSEGRKEVSIIELSHRKMMKKRNKKILDNWMTIQELMTHGAKAPDD
PRAKVHNAFLSVTTV
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggataatggtttgtgtatggtaaacgacgactccaactttgaccacagagatgtgggt
gtctgtaagaaaggatgcagacttctcttgcagacagacatcgcccagggagaccattgc
tgtttagatgcgctacgcatgctgaacgatgcgctccaggaacggagcgttaccttggag
catgaagcccggatgcagcggctcaggtgggtcaggagagagcagtccctactggcccag
gtgtcatccctccaaagcgaggcgcagctgactgctctgagataccagcgaaagttgcac
caatacatgctgaacatcaacaacatagccaaacaggttattggatattacaagagtgac
tcagtagcttctggagtctgcctgtcccagctctctgaacaaggtccaactgatgcactg
gacgaactacaggaccaggaggagcatggcctggtaccagaggtgaatggaaaggacctc
tccaaggccagtcatgacgaggcagtggaggcgtttcgctctgctaaggaacccattgtg
gtgcaggtcctcaggaggaacactgctggccgcggcagccatgttagctccactcaggaa
gtggacgtggtggacatgtgcacgcagaccgacatcacctttgaacatatcatggccctg
gccaagctccgggccaccactcctcccgtgccggacatctgccccttcctgctgtctgac
agctgtcactctctccacaccatggaacaggattactatgaggggagagctgatggaggg
aggacagaggagtttgagtatgaggaggtggagctgtgtcgactgaacagccaggagaag
ttgggcctgacgctgtgctacaggacagacgaggaggaggacatggctatctatgtcagt
gaggttgggccaaacagcatcgctgcaagggacggacgcataagagaaggagaccacatt
ttacagatcaatggtcaggatgtgcaggacagagaggaggctgtagctgtgctctccagt
gaagacacaaggaatatcatactgctggtcgccaggcccgagatgcagctagaggaggcg
tggttggatgatgaacacagtgagttcctggagcagttgaagatggagatgttggaggag
cagcagagagaagagatggagctggaggcactacaggaagaacaggagcagcccagagga
acacaagaggatgacatcactgccacctgttcctccctaactcaggacaaggacagtgag
ctggggatgtctgaccacaatgcccttctaacccacatccagagacgactgtcccagtgc
ctgagggatagacaggacactgggcatcatcgtctggacgaagaagaggaggaagaggag
ttggaggtggaggagggtgatcgcttccagcagctcctggagctgaagtgtcagatccgt
aacagcggggagtacgacctgttctacagcagacacagcaccatcgagtgtagtctggga
gagccggctggcggcgtgcagcatgagctccgcatgctcaacgaggagctctgcagcatt
gagcttgagtgccagaacatcatgcaggcccacaagctccgcaagggaccgggggggacc
cagagagaccaggtgcagcaggtgtcaaccataaccggccaccccgtgcccacggaccaa
agcttcctccgaggcagcagggactcgcccatcaggggcaagctggctgacatcaacaag
cgccaagagaaaccggagaagtcagacaaggacagctcgagcgcctacaacacggcagag
agctcgcgcagcacgccgctggccatggaccgatcccccgagcactccctccagaggagg
atggtcaccatcaccaaccagaggaacctccgcagcagcctggcaagccttcatgccaca
gccagccccagtcatagccccagcccaacacaacggtcgctccaccgaacccccatccca
ggcaaggccagtagccccgaccacagccccaaccgctacgagtcggaccagactgccccg
gcagacgatgaaagaagcgggaacgggaaggtgaagcctcagcatcctcccagggcttcc
cagatcccttacctctccccgtcccgtagctcccagcacaggcagcccaacaccaacatc
ccggcacactaccagagctacatgcagctgatccagcagcgctcggccgtggagtacgct
cagagccagctcagcctgctcagcgtggtcaaggagccccagttgatccccgccagcgag
cccaagatggagtggaaggtcaagatccgttccgatggcacgcgctacatcacaaagaga
cccatcagggacaagatcctgcgggaacgcgccctcaagatcaaggaggagcgcagcggc
gggatgaccacggacgacgacgctatgtccgagatgaagatggggcggtactggagtaaa
gaggagaggaagcagcatctggtcagggctaaagaacagcggaggagacgagagttcatg
cagcggagcaggctggaaagcctgagggagagtcctcagagcagcagcgaaggacgcaag
gaggtcagcatcatcgaactgagccacaggaagatgatgaagaagcgcaacaagaagatc
ctggacaactggatgaccattcaggaactgatgactcacggggccaaggcccccgatgac
cccagggccaaagtacataacgccttcctgtcggtcaccactgtataa
DBGET
integrated database retrieval system
