Oncorhynchus kisutch (coho salmon): 109889861
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Entry
109889861 CDS
T09179
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109889861
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
109889861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109889861
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
109889861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHLD2_C
RHD_DNA_bind
SHLD2_OB1
RHD_dimer
Ank
OB_SHLD2_2nd
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
109889861
NCBI-ProteinID:
XP_031677649
Ensembl:
ENSOKIG00005006743
LinkDB
All DBs
Position
LG4:complement(65887401..65909973)
Genome browser
AA seq
1725 aa
AA seq
DB search
MTDKPKMYVFMGAPPLTPVSDVDEGKSGQWRTMELCWQGGRLRAREDEGGIHGSDGRGEV
DASSEPGELPSTSKHGTSLQGPETQTGFPLQREPGCKETTQAGLAPLASSTPQNEQTVVN
DEDMCSESVKEYLDSCFPAGQPDPGPESAPERAGIQLDPAPAQSVSVETEYLSAWTVSQA
LLLRGRLGGQPETSPVKTRLPQTPPKSTPSTFTSSPELYSPATPTQSPRERGQGGTQQGS
MELFYEPLLSQRQEEGGVILEATADGVLCSQGNPMGNKEVGVVSKSPLPSPRSPVNTSPA
PPAPKRSKVSPTIGRTDQSSDQTTGKGCVTSQAHTTLARCGTQGVRYSILVAVVHPCHLK
EIRVRSGASAGSCIPLASVVVTDQSEVEMKVVLWRRAAFWALTVYSGDVLLITGVMVNED
KWRGETVLQSSYSSKLLNLGQVTGSSSPLVPQNVNGRTLRSLCGYLREKRPLLVSLPPRV
PQDPNTISHARLRTLRPDTLVHALLRITHTEMITGWRAEAEGTSRVGGVLKAVLTVEQGD
GQQGAVVLWGAALTWLQRINRNKDAVWVFRLLLVRESMTTGLLELHSTPWGSCEPLFPDD
TRALEFYRPGPAKHTSTSLEIDLHTLLSQKYTGDVELRVHVTAFQFQGSPSQNALQRMDS
DTHLESILDTVSGDITFTGCGRCAAELDTDDNGIYCPCYPCLPHTGVRRYYRPVILTVKN
GESQVCVQVPPVLLQKMLLDTPPDKLSKTVAPGSDVRLVQVVAERIYSLLSIPRRTFLLT
VRSHFLCDENSVPTAQDFLLLDFHDPKSIVIYDPLTGIMSEALRMDEAQYSMKMIENELM
MNLSTYEFMPPVEVKSEPYVPETVHGPYIQILEEPKQRGFRFRYECEGPSHGGLPGASSE
RNRRTYPTVKVSNYVGIARVEVQLVTHSDPPQVHAHSLVGRHCCTESGKCSVDVGPNELT
AQFSNLGILHVTKKGVGEVLFKRLRDEKRRQRGQHYHFTDAEEQAILREANELGRIMDLN
IVRLKFTAYLQDSNGGFSRALKPVVSNPIFDSKSPNASNLKISRMDKTSGSVLGGDEIFL
LCDKVQKDDIEIRFYEEDGSWEAFGDFSPTDVHKQYAIVFKTPPYHSTEIDRSVTVFLQL
KRKKVGDCSDPKQFTYVPQIQDKEEVQRKKQKPLPYNDPWRGPLGGAGGAGRGAGGPGGA
GFQFNQQMNGSGWMGGGFTCFGGGGAQMSGTTAQAEGTQQQAGGMAGQMPGQTPGQTASP
LQQQLFQIVATLQSRASRMTKQTAGALLQYCTTGDVRVLLAMQRHLCGVQDENGDTPLHL
AIIHQQSAVIQQLVHTLLTIQQRKVLDKLNHLSQTPLHLAVITRQVKVVDVLLRAGADPT
LLDRDGRTPLHLAALAGDDVTLRVLLGHLGERYNHLVNMADYHGLHPLHLAVRKGGERCL
RLLVGSGAKINDPERGSGCSALHLAVRENLLKVACTLITELKADVNMCTFGGNTPLHLAA
SQGSPTLCSMLIAAGADKNLENDEPLFFSSSSSDEEQEDGPIRDFRELQIQQQPTIPPPL
GKEQVNPRKRPATGHTPFDLTKCQKVRDLLDIRQRPKSSQNSSKKPKPNSMDESEQLDSE
TLHKLCELLSLGDVPWRQLAEKLNMLSLAHLYQESPSPCYKLLENYKLGGGPVEGLVEAL
QSLGLTEGVRLLRRAELREDKQNTDQTVDSGFGSQPMDEPALANQ
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaaacccaaaatgtatgtgttcatgggtgcccctcccctcacacctgtgtct
gatgttgatgagggaaagtctggtcagtggaggaccatggagctctgctggcaggggggc
agactgagggccagggaagatgagggtgggatccatggaagtgacggtcgaggtgaggtt
gacgcttcatcagagcccggagagctgcccagtaccagcaagcacggtaccagtctccaa
ggtcctgagacccaaaccggatttcccttacagagagaaccaggctgtaaagagacaacc
caggctggcctggcccctttggcgagctcaactccccagaatgagcaaacagttgttaat
gatgaggacatgtgttctgaatcagtgaaggagtatctggacagctgcttccctgccggg
cagcctgacccagggcctgagtctgcccctgagagagcaggcatccagttagatccagcc
cctgctcagtctgtgtctgtggagacggagtacctcagtgcatggacagtcagccaggcc
ctgctcctgagaggaagactggggggacaaccagaaaccagccctgtgaaaaccagactt
ccacaaacgccacctaaatccacgccatccactttcaccagctccccagagctgtacagc
ccagccacccccactcagtcccccagagagcggggccaaggagggacccagcagggctcc
atggagctcttctatgagcccctgctgagccagaggcaggaggaaggaggggtgatactg
gaggccactgctgatggggtgctctgctctcagggtaacccaatggggaacaaagaagtg
ggtgtagtctccaaaagccctctcccatcacctagatcccctgtaaatacctcaccggca
cccccagcccctaaaaggagtaaagtctcccccacaataggcagaactgatcagtcatca
gaccagactacagggaagggttgtgttacttcccaagcccacaccacactggctagatgt
ggcacccagggagtgcgttactccatcttagtggccgtggtgcacccgtgtcatctgaag
gagatcagagtgaggtccggggcgtctgctggctcctgtatccccctggcctctgtggtg
gttactgaccaatcagaagtggagatgaaggtggtcctgtggaggagggcagcattctgg
gccctgactgtgtattctggagatgtgctgctcatcactggtgtgatggtgaatgaggac
aagtggagaggagagacggttctgcagtcgtcgtacagcagcaagctcctcaacctgggc
caagtcactggcagcagctcacctctagtcccacagaatgtgaatggccggacactgagg
tctctgtgtggttacctgcgtgagaagcgtcccctgctggtgtccctccctcctcgcgtc
cctcaggatcctaacaccatttcccacgcccgtctcaggaccttgagacctgacacactg
gtgcatgccctgcttcgaatcacacacactgagatgatcacagggtggcgagccgaggca
gagggcacgtccagggtaggaggagtactgaaggctgtgctgactgtagagcagggggat
ggacagcagggggcagtggtgctctggggagctgccttgacctggctgcagcgtatcaac
aggaacaaagatgcagtgtgggttttccgtttgctcctggtaagagagagtatgacaaca
ggcctgctggagctgcactccaccccctggggctcctgtgagcctctcttccccgacgac
acgcgggcgctggagttctaccggccaggccctgccaaacataccagcaccagcttggag
atagacctgcacactctcctgtcccagaagtacactggtgatgtggaactgagagttcac
gtcacagctttccagtttcaaggcagcccctcccagaatgcactgcagcggatggacagc
gacacgcatctggagagtatcctggacacagtgtcaggtgacatcacattcacaggttgt
gggcgctgcgctgccgagctggacacagatgacaacgggatctactgtccctgctacccc
tgcctcccccatactggagtacgacgctattacaggccagtaatactgacagtgaagaat
ggggaaagccaggtgtgtgtgcaggtgccacctgtcctgctgcagaagatgctgctcgac
actcctcctgacaagctgagcaagacggtcgctccagggtcagatgtgaggttagtccag
gtagtggctgagaggatttattccttgctgtccattcccagacgcaccttcctcctcacc
gtccgcagccacttcctgtgtgacgagaacagtgtccccactgcccaggactttctactg
ctggattttcatgaccccaaatctatcgtcatctatgatccactgacaggcatcatgtct
gaagcactaagaatggatgaagctcagtacagcatgaaaatgattgaaaatgagctgatg
atgaacttatcgacttatgagttcatgccacctgtggaggtcaagagtgagccctacgta
cccgagacagttcatggaccctacattcaaatacttgaggagcccaaacagagaggcttc
agattccgctatgagtgtgagggtccgtcccacggtgggctcccaggggcctccagcgag
aggaacaggagaacctatcccactgtcaaggtgtctaactatgttgggatagccagggta
gaggtgcagctggtgacccactctgaccccccccaggtccacgctcacagtctggtgggg
aggcactgctgcacggaaagtggaaaatgcagtgtggatgtgggccccaatgaactcaca
gcacagttcagtaacctgggtatcctccatgtcacaaagaaaggggtgggagaagtgttg
ttcaagagactgagagacgagaagaggagacaaagggggcagcactaccattttactgat
gcagaggagcaagccatattgagagaagccaacgagctgggcaggatcatggacctgaac
atagtgaggttaaagttcacggcctacctccaggacagtaacggagggttctctagggcc
ctgaagccagtggtctccaatcccatctttgacagcaagtcacccaacgcttccaacctg
aaaatctcccgtatggataagacctctgggtctgtgctgggaggggatgagatcttccta
ctgtgtgacaaagtacaaaaagatgatattgagatccgcttctacgaggaggatggaagc
tgggaggcctttggtgacttctctccaactgatgtccacaagcagtatgccatcgtgttt
aagacacccccgtaccacagcacagagatcgatcgttcagtcactgtgttcctccagttg
aaaaggaagaaagtgggagactgcagcgaccccaagcagttcacctacgttcctcaaatt
caagataaagaggaggttcagcgtaagaagcagaagcccctcccctataatgacccatgg
agagggcctctgggaggggctgggggggcaggtagaggtgccggaggaccaggaggagca
ggattccagtttaaccagcagatgaatggatcagggtggatggggggtggattcacttgt
tttgggggtggtggagcccagatgtcaggcaccactgcccaggctgagggtacccagcag
caagctggagggatggccggacagatgccaggacagacgccaggacagacagcctcacca
ctacaacagcagctcttccagattgttgctactctccagagcagggcctctcggatgacc
aagcagacagctggggctctcctacagtactgcaccactggggatgtccgggtccttctg
gcaatgcagagacacctatgtggggtccaggatgaaaacggagacacgcctttgcacctg
gccatcattcaccagcagtcagctgtgatccagcagctggttcatacactcctcaccatc
cagcaacgcaaagtcctcgacaagctcaaccacctcagccagactccactccatctggcg
gtgatcaccaggcaggtgaaggtggtggatgttctcctgagggccggggctgaccccacc
ctgctggaccgggacggccggacccccctgcacctggcagcgctggccggggacgacgtc
acactcagggtcctcctggggcacctaggagaacgttacaaccacctggtcaacatggcc
gactatcatggtctccatcctctccacctggctgttcgcaagggaggagagcgctgtcta
cgtctgctggtggggagcggggctaagatcaacgaccccgagcgggggagtggatgctcc
gccctccacctggctgttagagagaacctcttgaaagtggcctgcactctcatcacagag
ctgaaagcagatgtaaacatgtgtacgtttggggggaacactcctctccatctggccgcc
agtcagggctcccccactctctgctccatgctcattgctgcaggagccgataagaatctg
gagaatgatgagccgctcttcttcagctcctcttcctcagatgaggagcaagaggatgga
ccaataagagatttcagagagttacagatccaacagcaaccaaccatcccaccaccgttg
gggaaagaacaagtcaaccctcgtaagagaccagcaacaggacatacaccctttgacctt
actaaatgtcaaaaggtgagagaccttctagacatcagacagagacccaagtccagccaa
aactcaagtaaaaagcctaaaccgaacagcatggacgaaagtgagcagctagacagtgag
acgctccataaactgtgtgagctcctcagtctgggcgatgtgccctggagacagctggca
gagaaactcaacatgctctccctggcacacctgtaccaggagagtccctctccctgctac
aaactgctggagaattacaagttgggtggcggtccagtggaaggactggtggaggctctg
cagtctctgggtctgactgaaggagtgcgactgctgagacgggctgagctgagagaggac
aaacagaacacagatcagacagtggacagcggctttgggagtcagccaatggatgagcca
gccttggccaaccagtga
DBGET
integrated database retrieval system
