Oncorhynchus kisutch (coho salmon): 109889955
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Entry
109889955 CDS
T09179
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109889955 (col17a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109889955
NCBI-ProteinID:
XP_020337402
LinkDB
All DBs
Position
LG4:71763586..71788921
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AA seq
1649 aa
AA seq
DB search
MDDLTTRKRNHSGGSSGGKVVTETTTSTSRLVSLPPKGGSGSKSSTHRTMSSNAGGLWLE
KNILTQNSSGTNFSSSSVGVNAGGSSSSSGFYMGDYSEGGGDCGGGGGGGGGGGGGGGGG
GGGGGGGSGYGGVYGGSPGSKVKSSSSGCSRRAQSSASPGGLSPGFLERKSMASRSGGYD
GSSSGNSSPEFTRKDYAGSGATRIGRSQSRESEIRARLQSASPSAGRWTELDDVKRLVKG
GRSNSVSPTRSSASSTLPVPRKATVEAKIVTQASQSVSGQYETTTLDSGLPSSYCWTSST
LPISSATCNSSSAYGYHSNTNNMSPGLGSSLLNTTSPSSLSVYGFQNNLAPMSSSVLTTS
GVNAHSGTLTAGYGVQKNISNGGGLVSTGVSTSAMSALRSHTDDAYRKDLKYLVLQKENV
PVKRDTEVLTLTKDSGKHFTSSVRSVGGSLSGDSLKKEKMVSSYSETAPVLLKSESNSYY
GSPLVSTKDKATYAEIQKEGDYYSSGGRGGGCCGCEDSCCSWWKWLLGLLLLSLLLLGLL
FGLIALAEDVRNLKSQVAALESTSTAAHASRQSVSKNDIRNPQSGPYMDTGGAARSDNTL
NQDTSLGMGMGTGTGTGIAGHTDNAALQRTIQELLVAEMQSKSFKALLTSSMKGDRGEPG
TKGDAGNHGTKGDNGFPGLPGPPGAIGHPGHEGPKGQKGSQGDHGAEGPQGLRGREGPGG
PRGEPGPSGFGEKGEKGSPGESGSLGPAGPVGPAGPKGSGGAPGTPGTPGQPGSQGFRGE
SGLPGPKGERGPAGFQGIKGDHGEKGPRGAAGDPGLSGLPGPAGEKGPKGSAGTPGIDGD
KGQRGDHGPTGLPGIRGPSGPAGDSGLPGTPGLQGPPGIPGNPGQPGAKGEAGEPGRIIN
AGGSSSVAIPGPPGSPGAPGQAGPPGLSGPIGPAGLPGQSGPKGERGLKGEMGIQGLQGE
AGISVKTSETVSSSRAERQFSLPAQPGPPGPPGPPGAPGRAGDSRSGLPGPAGPPGEPGY
GRPGPRGEKGESGSFVPNSGTFFSGPPGPPGPSGPKGSPGTPGPRGNQGDSGQPGLPGSP
GRPGVGSERASPYGGTHGPPGPPGTPGIPGPEGRKGEPGIPGSPGLPGSARGTVAASTGF
PGPPGPPGPPGHPGIPGIASAPPDLRQYVNDYLRINARSMSSGLPGPRGLPGPPGAPGSS
GSSSSVEDISSRVIAYLQRSGSGFGGGAQGPPGPPGLPGSSGSGSGSMSVNDLIVMLQRD
DVRRYVMGPPGPPGPAGPLARGGSTANYDPQEVATYVFRIMNERGIGGGQPGPPGATGPP
GLPGSFSGVSDISALLQNSQFRAMVGRSAGAPGPPGTPGIPGSPGTPGTPGGPSYRSSAS
GGLRIEDVQHYLQSSGYSGPPGPPGPPGPQGPPGNSHGVVSYGDSRNIGNYQRESIRTEL
QAYLSSDSIRHSFIGQPGPPGSQGPRGHKGDPGEPGGVETNRQSYAQSDPRYSSDLERRQ
SDIGRLTEPLDYSNVALRVTDYIKNQGLLQDILSESHQRGGSWESQGLPGPPGPPGPPGY
SRVIGAYGNVTADLMDFFRTHGTIVGPPGNTGPKGDRGYLGPKGDRGEIGRPGPPGLQGL
HGQDGYRGEKGEKGAGEVRVGRRRRSIGV
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaacaacaagaaagagaaaccactcaggaggaagctccgggggaaaggtt
gtgacagaaactacaacctcgacaagtagattggtatctttacctccaaagggtggcagt
ggatcaaaaagtagtacccacaggactatgtctagcaatgctggaggcctgtggttggaa
aagaacattttaacccagaacagcagtggaactaacttttcctcatcttctgtgggtgtc
aatgccggaggatccagctcctcatcagggttctacatgggggactactctgagggtggt
ggagattgtggagggggaggtggtggagggggaggtggtggaggtgggggaggtggagga
ggcggcggaggtgggggtggctcaggctatggaggagtgtatggaggaagccccgggtca
aaagtaaagagcagctcgtcagggtgctccaggagggcccagagctctgcctcgcctggg
ggtctctcccctggcttcctggaaaggaagagtatggccagtcgctcaggaggctacgac
ggaagctcaagtggcaactcctcccccgagtttacacggaaagactatgcagggtcaggt
gccactagaatagggaggagccagagcagagagagtgaaatcagagccagactgcagagt
gcctctcccagtgctggcagatggactgagctggatgatgtgaagaggctggtgaaggga
ggacgctccaacagtgtcagccccacccgctcctccgcttcctccaccctgcctgtcccc
aggaaggccaccgtcgaggccaagatcgtcacccaggcctcccagtcagtctctgggcag
tatgagaccactaccctggactctggcctaccttcttcctactgctggactagctctacg
ctgcccatctcctctgccacttgcaacagcagcagcgcatacggttaccatagtaacaca
aacaacatgtctccaggcttggggtcctccctgctcaacaccacctcaccctcctccttg
tcagtgtatggattccagaataacttggcgcccatgtccagtagtgtcctcaccaccagt
ggagttaacgcacattcaggcactttgacagcaggatatggagtgcagaagaacatatcg
aatggtggtggtctcgtcagcaccggagtgtcaacctctgcaatgtccgctttgaggtct
cacactgatgacgcatacaggaaagacttaaagtaccttgtgctgcagaaggagaatgtt
ccagtcaagagagatactgaggtgctcaccctcacaaaagacagtggaaaacacttcact
agcagtgttcgcagtgttgggggttcactgtctggtgattctctaaagaaggagaagatg
gtgtccagctacagtgagactgcaccagtccttctgaagtctgagtccaattcatactat
ggatcacccctagtgtcaacaaaagacaaagcaacatatgcagagatccaaaaagagggg
gactactacagcagcggaggacgaggtgggggctgctgtgggtgtgaggactcctgctgt
tcctggtggaagtggctgctaggactgctcctgctctccctgctgctcctgggcctgctc
ttcgggctcattgccctggcggaggacgtgaggaatctgaagtctcaagtggcagctctg
gagtccacctccaccgctgctcatgccagccgccagtcagtctccaagaacgacatccgc
aacccccagtctggcccctacatggacactggaggcgcggcccgctccgacaacaccctg
aaccaggataccagcctgggcatggggatgggcactggcacgggcactggcatcgccggg
cacacagacaatgctgccctccagaggaccatccaggaactactagtagctgaaatgcag
tctaagtcattcaaagccctacttacctcttcaatgaaaggggacagaggagagccggga
actaaaggcgatgcagggaatcatggaactaaaggtgacaatggtttcccaggactgcca
ggtcctccaggtgccattggtcacccaggacacgaaggacccaaaggacaaaaaggaagt
caaggtgaccatggagctgaggggccacaagggctcaggggccgagaggggcctggaggg
cccagaggggagccaggaccctcagggtttggagagaagggggagaaaggttctcctggt
gaatcaggatctcttggtcctgctggtccagtcggcccggctgggcccaaaggctcaggg
ggtgctccgggtactcctggtacgccaggccaaccaggatctcaaggcttccgtggagaa
tcaggactacctggtccgaagggggagaggggtcctgctggatttcagggaatcaaaggt
gaccatggtgagaaaggacctcgtggtgccgcaggtgacccaggactatcaggcttgcca
ggaccagccggagagaaaggacccaaaggatctgcaggaactcctggaattgatggtgac
aaaggccaaagaggtgatcacggtcctactgggttaccagggatcagaggtccatctggg
cctgcaggggactcaggcctaccaggaacacccgggcttcaagggccaccaggaatacca
gggaaccctggacaaccaggagccaagggtgaggcaggagaaccaggaagaatcatcaat
gcagggggatctagttctgtggccatccccggccccccaggaagccccggagcacccggt
caagccggacccccagggttatcaggccccattggccctgctggtcttcctggccagtct
ggtcctaaaggtgagagagggctgaagggtgagatgggtattcagggactccagggagag
gcaggtatctcagtgaaaaccagtgaaaccgtcagctcatccagagctgagagacagttc
agtcttcctgcacaaccaggtccccctggtccccctggaccccctggagcccctggacgt
gcaggtgactcaagatcaggactcccaggaccagctggtcccccaggagagccaggatat
ggcagacctggtcctagaggagagaaaggagagtcaggaagctttgtacccaattcagga
acattcttctctggaccccctggacctcccgggccatctgggccaaaaggatcacctggt
acaccaggaccaagaggaaaccaaggagattcaggccagcctggtctaccagggagccca
ggaagaccaggagtaggctctgaaagagcatcaccatacggtggaacacatgggccacct
gggcccccagggactccagggattcctggaccagagggacggaaaggcgaacctggaatt
cccggttctcctggtcttcctggctctgcaagaggcactgtggcggccagcacagggttc
ccaggtcctcctggtccaccgggtcctcccggacacccaggcattccaggcatagcctct
gctcctcctgatctgcgtcagtatgtcaacgactatctccgaattaatgctaggagtatg
tcctctggtcttcctggcccacgtggcctccctggacccccaggagcccctggatcctct
ggatcctctagttctgtggaggacatatcttctcgtgtcattgcttatctgcagcgttca
ggatcaggcttcggcggtggtgctcagggtcctccaggccccccaggacttcctgggtcc
tctggctctggttctggctcaatgtctgtcaatgacctcattgttatgctacagagggat
gacgtacggcgatatgtaatgggcccacccggacctccaggcccagcaggaccattagcc
agaggaggcagtacggcaaactacgacccacaggaagtggctacctacgtcttcagaatc
atgaacgaacgcgggatcggtggtgggcagcctggacctccgggtgcaaccgggcctcca
gggctacctggctccttcagcggtgttagtgacatctccgcactcctgcaaaattcacaa
ttccgtgcgatggttgggcgctctgctggagcccctggtcctcctggtactccaggtatc
ccgggatccccaggcacccctggtaccccaggagggccatcttacaggagctcagcctca
gggggtttaaggatagaggacgtccagcattacctacaaagttctgggtacagtggtcct
ccaggcccacccggccccccaggacctcaggggcccccagggaactctcacggagtagtc
tcctatggagatagtagaaacatcggaaactaccagcgagaaagcatccgcacagaactc
caggcgtacctcagcagtgacagtatacggcactcctttattggccaaccaggtcctcct
gggtctcagggtccccgtggtcacaaaggagaccctggagaacctggtggggttgagact
aaccgtcagagttatgcccagagtgacccacgttactcttctgaccttgagcggcgccag
agtgacattgggagattgacagagccactagactactccaacgttgccttgagagtgaca
gactacatcaagaaccagggcttactgcaggacatcctgtctgagagtcaccagcgagga
ggctcctgggagtcccaaggcctcccaggaccccctgggcctcctggacctcccgggtat
agccgtgtcattggcgcttacggcaacgtgactgctgacctcatggacttctttagaacc
cacggcaccattgttggccccccagggaatactggcccgaaaggagacagggggtacctc
ggacccaaaggagacagaggcgagataggtcgcccaggccctccaggactgcagggactg
catggtcaggatggatacagaggagagaagggagagaaaggtgcaggtgaagttagggtt
ggtcgtcggcgtcggagcatcggtgtttaa
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