Oncorhynchus kisutch (coho salmon): 109890018
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Entry
109890018 CDS
T09179
Symbol
pnpt1
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109890018 (pnpt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109890018 (pnpt1)
03016 Transfer RNA biogenesis [BR:
oki03016
]
109890018 (pnpt1)
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
109890018 (pnpt1)
Messenger RNA biogenesis [BR:
oki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
109890018 (pnpt1)
Transfer RNA biogenesis [BR:
oki03016
]
Prokaryotic type
tRNA degradation factors
109890018 (pnpt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KRR1-like_KH2
Motif
Other DBs
NCBI-GeneID:
109890018
NCBI-ProteinID:
XP_020337559
Ensembl:
ENSOKIG00005048631
LinkDB
All DBs
Position
LG4:complement(77287735..77306226)
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AA seq
770 aa
AA seq
DB search
MKHLLRLGPTLARLNVRLCHQSVWNSHGTIQKVGVNLGEKKLEISTGKLARFADGSAVVQ
LGDTTVMVTAVSKTKPSPSQFMPLVVDYRQKGAAAGRIPTNHLRRELGTTENEILTSRLI
DRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALTLSDIPWNGPIGAVRIG
LVDGEFLVNPTRKQMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQMAREAKVTKRTPPKIFSAPEEMIEHTRQFASEKVYAVFTDFTHDKISRDDAIN
KVRLETEEQIKEKYPHAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRNLTSLRNISCEA
DIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFMLHYEFPPYAT
NEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLA
LMDAGVPITSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMDFKLAGTNKG
INALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNNTIAKPRTNRKENGPVVENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFITEICKDDQE
QQLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSAIGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSITMGTGNGQATSNSS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatttactgaggcttgggcctacgctggccagactaaatgtgcggttgtgccac
caaagtgtctggaacagccatggaacgatacaaaaagtgggtgtgaacttgggtgagaaa
aaacttgagatctcaacagggaaacttgccagatttgcagatgggtcagctgttgtgcag
cttggggatacaaccgtgatggtgacagctgtcagcaaaacaaaaccgtccccctcccaa
tttatgccactagtggtggactacagacagaaaggagctgctgctggtagaatccccact
aaccacttgcggcgggagttgggcaccactgaaaatgagattctgactagtaggctaata
gacagggcaatcagacccctttttcctgctggttatttctatgacactcaggtcttgtgt
aacctgttggcagttgatggtgttaatgatccagatgtactggctatcaatggagcctct
gctgcccttaccctttctgacattccctggaatgggcccattggtgcagtgcgcattggc
ctggtggatggcgagttcctggtgaacccaacacgaaagcaaatggcttctagcactatc
aatctgatagtggctggagcacctctcagccaagtggtgatgatcgaggcatctgctgag
aatgtgttgcagcaggacttctgtcatgcagtcaaggttggtgtgaagcacacacagcag
atcatattggctattcagcagatggccagagaagcgaaagtgaccaagcgcacccctccc
aaaatattttctgcgcccgaggaaatgattgagcacacacgacaatttgcctctgaaaag
gtctatgctgttttcacagacttcactcatgacaagatttccagagatgacgccattaac
aaagtgcgactagaaacagaggaacaaataaaagagaaatatcctcatgcagaaccttat
gaggtgatggaatccttcaacatggtgtccaaagaggtcttccgcaatctggttttgaat
gaatataggaggtgtgatggaagaaacctgacttcattaagaaatatttcctgtgaggca
gacatctttaagccccttcatgggtctgcacttttccagaggggacagacacaggttctg
tgctctgtaacatttgactccttggagtccagtattaaaacagacatcattactacagca
ttaagtggagtcaaagacaagaatttcatgcttcactatgagtttcctccttacgcaacc
aatgagattggaaagatgagtggaatgaacagaagagagcttggtcatggggcactggcg
gagaagtctttgagacctgtcatcccaaaagacttccccttcactattagagtcacctct
gaggttttggaatctaatggttcctcgtcgatggcgtcagcatgtggaggcagtttggct
ttgatggatgctggtgtgcctattacatcagctgtggcaggtgtagctattggactcatc
tccaaggcaaacccagagaagccatcggaaatccaggactaccgaatactgactgatatt
ctgggaatcgaggattacctaggagacatggacttcaaactggctggaacaaataagggt
atcaatgccttacaggcggatgtgaagattccaggcttacctctgaaacttgtaatggag
gctattcagcaagccacagttgccaagagggagattttgggcatcatgaacaataccatt
gccaagcccaggactaacagaaaggagaatggtccggttgtcgaaaatgtcagagtccca
gtctccagacgagcacgctttgttgggccagggggctataacctccgcagactacaagct
caaacaggtgtgacgataagccaggtggatgaggagaccttctctgtgtttgcacctact
cctggtgccatgaatgaagcccaggagttcatcacagaaatctgcaaagatgatcaagag
cagcagctggagtttggtgctgtttacactgccaccatcatggaaataagggacattggt
gtcatggtgaagctgtatcccaatatgagtgctgttctgctccataactctcagctggac
cataaacggataaaacacccaagtgctattggattagaggttggacagcagattcaggtt
aaatactttgggcgagacccaacagatggaagaatgaggctttcaaggaaagtgttacaa
tctccagcagcaacagttgttaagacactgagtgagaaacagagcatcaccatgggcaca
gggaatggccaagcaaccagcaactcgtcttga
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