KEGG   Oncorhynchus kisutch (coho salmon): 109890023
Entry
109890023         CDS       T09179                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03010  Ribosome
oki04120  Ubiquitin mediated proteolysis
oki04137  Mitophagy - animal
oki04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    109890023
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109890023
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    109890023
   04137 Mitophagy - animal
    109890023
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:oki03011]
    109890023
   04121 Ubiquitin system [BR:oki04121]
    109890023
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109890023
Ribosome [BR:oki03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    109890023
  Archaea
    109890023
Ubiquitin system [BR:oki04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   109890023
Exosome [BR:oki04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   109890023
  Exosomal proteins of colorectal cancer cells
   109890023
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 Dsc3_N TBK1_ULD Ubiquitin_5 OTU1_UBXL
Other DBs
NCBI-GeneID: 109890023
NCBI-ProteinID: XP_020337564
LinkDB
Position
LG4:complement(77407488..77410292)
AA seq 156 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRE
CPADECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
NT seq 471 nt   +upstreamnt  +downstreamnt
atgcagatttttgtcaaaaccctcactgggaagactataaccctcgaggttgagccttca
gataccattgaaaatgtcaaagctaagattcaagacaaagaaggtatccctcctgatcag
cagaggttgatcttcgctggtaagcagctggaggatggacgcacactgtctgactacaac
attcagaaggagtccactctgcacttggtgctgagactgcgtgggggtgccaagaagagg
aagaagaagtcctacaccactcccaagaagaacaagcacaagaggaagaaggtcaaactc
gcagttctcaagtactacaaggttgacgaaaacggcaagatccaccgtctgcgtcgtgag
tgcccagctgatgagtgtggcgctggcgtgttcatggccagccactttgataggcactac
tgtggaaagtgctgcctcacctactgcttcaacaagcctgaggacaagtaa

DBGET integrated database retrieval system