Oncorhynchus kisutch (coho salmon): 109890359
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Entry
109890359 CDS
T09179
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oki01002
]
109890359
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109890359
Enzymes [BR:
oki01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
109890359
Peptidases and inhibitors [BR:
oki01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
109890359
Ubiquitin system [BR:
oki04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
109890359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
109890359
NCBI-ProteinID:
XP_031679985
Ensembl:
ENSOKIG00005014550
LinkDB
All DBs
Position
LG5:complement(3744232..3768970)
Genome browser
AA seq
2595 aa
AA seq
DB search
MTVTTRGSPVGGNDSQGQAPADSQSQPPPTQAQAVSPNPSTTEPSPVSPPAAEEEQGQGD
SAPALEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLCKKGLDVKCEA
CQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIITNTHRLVELCVTKLPQDWFPLLELLA
TATNPHCKFHIYNGTRPSETIPAGATLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQ
TLHDRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELK
KEAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNAL
NEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEK
ILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKES
WTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKI
LDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPH
VFYRHDLINQLQHNHALVTLVAENLSAYMETMRPFSKAEHADFDPQTVRVGSRYSHVQEV
QERLNFLRFLLKDGQLWLCAPQAKQIWRCLAESAVFLCDREACFKWYSKLMGDEPDLDPD
INKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYL
WRVVIQGTDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQLCFDRLKASYDTLCVLD
GDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERSILPMSRAFRGKHITLIVRFPN
QGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIELFIGGEVVDPADDRKLIGQLN
LKDKALITAKLTQVSATVPSSPDSSSDSSTASPSNHGNHFSEGPNPEVEGCLPGVIMSLH
LRYISFLWQVADLGCTLNMPLLRDGARLLMKLMPPDNGTVENLRAICLDHAKLGENSLSP
TLDSRFFGPSPSQVLYLTEVVYALLMPASGTLGEDASDFQYNFLKSGGLPLVLSMLTRNN
FLPSADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPVVEGTSPASPINQVTHDQ
ALVLQSALQNIPNPASECMLRNVAIRLAQQISDESLPPNSQNFFQASKYIPDLCVIRAVQ
KIVWASGCGTVQLVFSSNEEISQIYEKTNAGKEPDGEDEMVCCEALEIMTLCFALLPTAL
DTLSKEKAWQTYIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGS
TAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEALLNNEIDWLKKIRDEVKRTGETGVE
ETILEGHLGVTKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASIVYLQYVKSGEF
PTEQAIPVCSSPASINAGFELLVALPVGCVRNLKQIVDTLTDMYYLGCEALTEWEYLPPV
GPRPNKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGVLAVEGTGTDVDDELSGDEKQENE
TNADGTVRDEVFAYQHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHLASSRLQYYVPRG
FWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKAMGHSSMLSKVLGGSFADQKICRD
CPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLI
KKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDGNPESQM
IMQNEPSEPDPPGCSSKYRLVGVLVHSGQASGGHYYSYISQRDCGTGGSADSGQKERWYK
FDDGDVTECKMDDDEEMKSQCFGGEYMGEVFDHMMKKMSYRRQKRWWNAYILFYERMDAA
GGGAAVEADGELARCISELTVSPTTPRQVTMPGAIECSVRKQNVQFMHSRMQYSLEYFQF
VKKLLTCNSVYLNPPPGQDHLLPEAEEIAMISIQLAARFLFSTGFHTKKVVRGPAGDWYD
ALCILLRHSKNVRCWFAHNVLFAYPTRFSEYLLECPSAEVRGAFAKLIVFIAHFSLADGP
CPVPTSSPEGSTQGCDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAE
KTQLLKLSVPATFMLVALDEGPGPPIKYQYAELTKLYAVVSQLLRCCDVSTRMQSSINGN
PSLANPYGDANLTTPIMPLQQLVSEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQ
FSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDT
IQRSKNHYQKRAYQCIKCMVALFSNCTVAYQILQSNGDLKRKWTWAVEWLGDELERRPYT
GNPQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEEVRKEPDDQEATEDHD
SSPPEDTALYPHNPAPATQFQQQNNHPHAQPYTGPAAQHMNTPQRPPQRAQESWESTTEE
VGPVAPPPAVQATKE
NT seq
7788 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcaccacacgtggctcccccgtggggggaaatgatagccagggccaggcaccc
gctgattctcagagccagcccccacccacacaggcccaggcggtctcccccaacccgtcg
accacggagccgtctcctgtgagcccaccggcggctgaggaggagcagggccaaggagac
tctgcccctgctctggaggaggaggagcctgccttccctcacactgacctggccaagctg
gacgacatgatcaacaggccccgatgggtagtcccagtcctgccaaagggggaattagaa
gttctacttgaagctgctatagacttatgtaaaaaagggcttgatgtgaagtgtgaggcg
tgccagaggtttttcagggacggcctgaccatctccttcacaaagatcctcacagacgag
gctgtcagtgggtggaagtttgagatccataggtgtatcatcaccaacacacaccggctg
gtggagctgtgtgtgaccaagcttcctcaggactggttccccttactggagctactggcc
acagccaccaacccccactgcaagttccacatctacaacggcacacggccctctgagacc
atccccgccggggccacgctggccgacgacgagctcttcgcccgtccacctgaccctcgc
tcacccaagggctggttggtggacctgattaataagtttggcacgctgaacgggtttcag
actctacacgaccgcttcatgagcggacaggcactcaacgtacagatcatcgctgccctc
atcaagccgttcggccagtgctatgagttcctgaccttgcacacagtaaagaagtacttc
ctgccagtgatcgagatggttcctcagttcctggagaacctgacggacgaggagctgaag
aaggaggccaagaacgaggccaagaacgatgccctgtccatgatcatcaagtccctgaag
aacctggcctccagggtgcccggtcaggaggagacggtcaagaacttggagatatttagg
ttgaaaatgatccttaggttattgcagatttcctcattcaacggcaagatgaatgccctg
aacgaggtcaacaaggtcatctccagtgtgtcctactacacgcatcggcatggcaacccc
gaggaggaggagtggctgacggcagaacgcatggcggagtggatccagcagaaccacatc
ctgtccatcgtgctgagggacagcctccaccagcctcagtacgtagagaaactagagaag
atactccgcttcgtcatcaaggagaaagccctcaccatgcaggacctggacaacatctgg
gcagcgcaggctggtaagcacgaagccatagtgaagaatgtccatgaccttctggccaaa
ctggcctgggacttctctccagagcagctcgaccatctctttgattgcttcaaggagagt
tggacgaatgcgagtaagaagcagcgtgagaagctgctggagctgatccgtcgtctggcg
gaggacgataaggatggagtgatggcccacaaggtgctcaacctgctgtggaatctggct
cacagtgacgacgtccccgtggacatcatggaccaggccctcagcgcacacatcaagata
ctggactacagctgctctcaggacagagacacccagaagatccagtggatagaccgcttc
atcgaggagctgcgcaccaacgacaagtgggtcataccagccctgaagcagatcagagag
atctgcagcctgtttggggaagctcctcagaacctcagtcagacccagaggagtcctcat
gtgttctatcgtcatgacctgatcaaccagctgcagcacaaccatgccctggtcactctg
gtggctgagaacctgtctgcctacatggaaaccatgagaccgttctccaaagctgaacat
gcagactttgaccctcagacggtcagagtgggaagtcgctacagtcatgttcaggaggtc
caggagaggctcaacttcctgaggttcctgttgaaggacggacagttgtggctatgtgct
cctcaggccaagcagatctggaggtgtctggctgagagcgccgtcttcctgtgtgaccgg
gaggcgtgcttcaaatggtactctaagctaatgggagatgagccagacctggacccggac
atcaacaaggacttctttgagaacaatgttctgcagctggacccgtccctgctcacggag
aatggcatgaagtgcttcgagaggttcttcaaggctgtcaactgccgtgagggcaaactg
gtggccaaacgcagggcctacatgatggatgacctggagctcataggactggactacctc
tggagggtggtgatccagggtactgatgacatcgctagccgagccatcgacctgctgaag
gagatatacaccaacctggggcccaagctgcaggtcaaccaggtggagatccacgaggac
ttcatccagttgtgttttgaccgtctgaaggcgtcgtatgacacgctgtgtgtcctggac
ggggacaaggacagcatcaactgtgcccggcaggaggccatccgcatggttcgcgtgctc
accgtgctcaaggagtacatcaacgaatgtgacagcgactaccacgaggagaggtccata
ctgcccatgtccagggcgttccgggggaagcacatcacgttgatcgtgcgtttccctaac
cagggtcgtcaggtggatgacctggacatctggtctcacaccaatgacaccatcggctca
gtgcgccgcggcatcctcacacgcattaaggccaacgccacgcacaccaagatagagctc
ttcattggcggggaggttgtcgacccggcggatgacaggaagctgattggacagctcaac
ctcaaggacaaagcattgatcacagccaagctgacccaggtgagtgccaccgtgccctcc
agtcctgacagctcctcagactcctccactgcctcgccaagtaaccacggcaaccacttc
agcgaaggacccaacccagaggtggagggctgcctgcctggagtgatcatgtctctccac
ctgcgctacatctcgttcctgtggcaggtagcagacctgggttgtaccctcaacatgcct
ctgctgcgagatggagccaggctccttatgaagcttatgcctccagacaacggtaccgtg
gagaacctgcgtgctatctgtctggatcatgccaagctgggagagaacagcctgagcccc
acactggactcccgcttctttggcccctcgccctcacaagtcctctacctcactgaggtg
gtgtatgcgttgctgatgccggccagcggcacccttggtgaggacgccagcgacttccag
tacaacttcctgaagagcggcggcctcccgctcgtattgagcatgctcaccaggaacaac
ttcctgccatcggccgacatggagacgcggcggggggcgtacctcaatgccctgaagatc
gccaagctgctgctgaccgccgtggggttcggacacgtcaaagctgtagccgaggcctgc
cagcccgtagtggaggggaccagccccgcatcaccaatcaaccaggtgacccacgaccag
gccctggtcctccagagtgctctacagaatatcccgaaccccgcctctgagtgcatgctc
cgcaacgtggccatacgactggcccaacagatctctgacgagtctctgcccccgaactcc
cagaacttcttccaagcatccaagtacatcccagacctctgtgtgatccgggcggtgcag
aagatcgtgtgggcttcaggctgtggcacggtacagctggtcttcagctctaatgaagag
atcagtcagatctatgagaagacgaacgcgggtaaggagccggatggggaggatgagatg
gtgtgctgtgaggcactggagatcatgaccctgtgttttgcactgctgcccaccgctctg
gacactctcagtaaggagaaggcctggcagacttacatcatagacctgctactgcactgc
cacagcaagtcagttcgtcagatggctcaggaacagttcttcctcatggccactaggtgc
tgtatgggacacagacccctcctattcttcatcaccctcctcttcaccgttttagggagc
acggcaaaggagagggcgaagcacgcaggggactactttacgctgctgaggcacctgctg
aactacgcctacaacagcaacatcaacctgcccaacgctgaggcgctgctcaataacgag
atcgactggctcaagaagatcagggatgaggtgaagcggacaggagagacgggggtggag
gagaccattctagaaggtcacctgggggtcaccaaggagctgctggccttccaaacacca
gagaagaagtactacattggctgtgagaagggcggggccaacctcataaaggagttgata
gatgacttcatcttcccggcgtctatcgtgtacctgcagtacgtgaagagtggggagttc
cctacggagcaggccatccctgtctgtagcagccccgcctccatcaacgccggcttcgag
ttgttggtggctctgccggtcgggtgtgtccggaacctcaagcagatcgttgatacactc
acagatatgtactacctaggttgtgaggctctgacagagtgggaatacctccccccagtg
gggccgcggcccaacaaaggctttgtggggctgaagaacgcgggggccacctgctacatg
aactcggtcatccagcagctctacatgatcccgcccatccgtaacggtgtcctggccgtg
gagggcaccggcaccgacgtggacgatgaactgtccggggacgagaagcaggagaacgag
actaatgccgacggaacggtgcgggacgaggtgttcgcctaccaacaccagtttgacgac
aagccctcgctgagtaagtcggaggacaggaaggagtacaacattggggtgctacgccac
ctacaggtcatctttggtcacctggcctcttcccgactgcagtactacgtaccccgaggc
ttctggaaacagttcaggttatggggtgagccggtgaatctgcgagagcagcacgatgcc
ctggagttcttcaactctttagtggacagtctggatgaggctctgaaggccatgggccac
tcctccatgctcagcaaggtgctgggaggctcctttgctgaccagaaaatctgccgtgac
tgcccacacaggtatgagtgtgaggagtcattcaccacgttgaacgtggacatcaggaac
caccagaacctgctggactctatggagcagtacgtcaaaggagacttgctggagggagcc
aacgcataccactgtgagaagtgtaacaagaaggtggacacagtgaagcgtctgctgatc
aagaagcttcctccagtgctggccatccagctgaaaaggtttgactacgactgggagagg
gagtgtgccatcaagttcaacgactactttgagttccccagggagctggacatggagccc
tacactgtggccggggtggcaaagctggagggagatgacggcaacccagagagccagatg
atcatgcagaacgaaccatcggaacccgacccgccaggctgcagttctaagtaccgcctg
gtgggggtgctggtgcattcgggccaggccagcggcggccactactactcctatatcagc
cagcgagactgcggcaccggcggtagcgccgacagcggtcagaaggagcgctggtacaag
tttgacgacggcgacgtgacggagtgcaagatggacgacgacgaggagatgaagagccag
tgcttcgggggggagtacatgggagaggtgtttgaccacatgatgaagaagatgtcctac
aggaggcagaagagatggtggaacgcctacatcctgttctatgagaggatggacgcggca
gggggaggggccgcagtggaggcagacggagagctggccaggtgcatctcagagctgact
gtgtctcccactacaccacgacaggtgacgatgccgggggccattgaatgcagtgtgagg
aagcagaacgtccagttcatgcacagccgtatgcagtacagcttggagtacttccagttc
gtcaagaagctgctgacctgcaacagcgtctacctcaaccctcccccgggtcaggaccac
ctgctgccagaggcagaggagatagccatgatcagcatccagctagcagctaggttcctc
ttcagcactgggtttcacaccaagaaagtagtccgggggcccgccggtgactggtatgat
gccctgtgcatcctgctgcgccacagtaagaacgtccgctgctggtttgcccacaacgtt
ttgtttgcgtatcccacgcgcttctctgagtacctgctggagtgtcccagtgccgaggtc
cggggggccttcgccaaactcatcgtcttcatcgcccacttctctctggcggacgggcca
tgccccgtccccaccagctcccctgaggggtccacacagggctgtgataacctgagtctg
agtgatcacctgttgagggctgtgttgaacctgctcaggagagaggtgtcagagcacggc
cgacacctgcagcagtacttcaacctcttcgtcatgtacgccaacctgggtctggcagag
aagacccagttgttgaagctgagtgtccctgctaccttcatgctggtggctctagatgag
gggcctggccctcccataaagtaccagtatgcagaactgaccaagctctacgctgtggtc
tcccagctactgcgctgctgtgacgtctccacacgcatgcagtcctccatcaatggtaac
ccgtccctggccaacccgtacggagatgccaacctgaccacccccatcatgcccctgcaa
cagctggtgtcagagatcctcttcgttaggaccagctatgtgaagaagatcatcgaggac
tgcagcaactctgaggagacggtcaagctgctgcgcttcagctgctgggaaaacccccag
ttctcctctaccgtgctgtctgagctgctctggcaggtggcgtactcctacacgtatgag
ctgaggccttacctggacctgctgctgcagatactgctgatagaggactcctggcagacc
cacaggatccacaacgtgctgaagggtataccagacgacagggacggcctgtttgacacc
attcagcgctctaagaaccactaccagaaacgggcctaccagtgtatcaagtgcatggtg
gctctgttcagcaactgtactgtggcctaccagatactacagagtaacggggacctgaag
cgtaagtggacgtgggcggtggagtggctgggggacgagctggagaggaggccctacaca
gggaacccccagtacacctacaacaactggtctccccctgtccagagcaacgagacctcc
aacgggtacttcctggagcgctcacattccgcacgcatgaccctggccaaggcctgcgaa
ctttgccccgaggaggtacggaaggagccagatgatcaggaggcaacagaagatcacgac
tcctcccctcccgaggacacagcgctgtacccccataaccctgctcctgccacgcagttt
cagcagcagaacaaccacccccacgcccagccctatacgggtccggctgcccagcacatg
aacacgccccagcggcccccacagagagcacaggagagctgggagagcaccacagaggag
gtggggcccgtggcgcccccgcccgctgtccaggcgacaaaagagtaa
DBGET
integrated database retrieval system
